Variant report

Variant	rs6864990
Chromosome Location	chr5:43997569-43997570
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:43996877..43998407-chr5:44002800..44004617,2	MCF-7	breast:

Extended variants
information (count: 110 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:107)

rs_ID	r²[population]
rs10461751	0.88[ASN][1000 genomes]
rs13155063	0.91[ASN][1000 genomes]
rs13157839	0.97[ASN][1000 genomes]
rs13159468	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13162787	0.85[ASN][1000 genomes]
rs13163941	1.00[ASN][1000 genomes]
rs13171334	0.85[ASN][1000 genomes]
rs13175096	1.00[ASN][1000 genomes]
rs13182333	0.88[ASN][1000 genomes]
rs13184580	0.88[ASN][1000 genomes]
rs13186056	0.88[ASN][1000 genomes]
rs13189575	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34048286	0.88[ASN][1000 genomes]
rs34053815	0.86[ASN][1000 genomes]
rs34085387	0.85[ASN][1000 genomes]
rs34136561	0.85[ASN][1000 genomes]
rs34157568	0.95[ASN][1000 genomes]
rs34338792	0.88[ASN][1000 genomes]
rs34371282	0.88[ASN][1000 genomes]
rs34464981	0.90[ASN][1000 genomes]
rs34518294	0.85[ASN][1000 genomes]
rs34528370	1.00[ASN][1000 genomes]
rs34579696	1.00[ASN][1000 genomes]
rs34601610	0.98[ASN][1000 genomes]
rs34602870	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34632546	0.93[ASN][1000 genomes]
rs34685647	0.92[ASN][1000 genomes]
rs34758083	0.88[ASN][1000 genomes]
rs34782313	0.85[ASN][1000 genomes]
rs34843393	1.00[ASN][1000 genomes]
rs34989022	0.82[AFR][1000 genomes]
rs35013918	0.88[ASN][1000 genomes]
rs35029702	0.84[ASN][1000 genomes]
rs35092969	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35140592	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35162434	0.85[ASN][1000 genomes]
rs35182890	0.88[ASN][1000 genomes]
rs35208539	0.85[ASN][1000 genomes]
rs35289692	0.83[ASN][1000 genomes]
rs35374202	0.88[ASN][1000 genomes]
rs35430857	0.88[ASN][1000 genomes]
rs35529195	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35696398	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35697247	0.85[ASN][1000 genomes]
rs35730404	0.88[ASN][1000 genomes]
rs35789639	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35792109	0.85[ASN][1000 genomes]
rs35798472	0.95[ASN][1000 genomes]
rs35939121	0.94[ASN][1000 genomes]
rs35970538	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs36030354	0.85[ASN][1000 genomes]
rs36030928	0.98[ASN][1000 genomes]
rs36062010	0.83[ASN][1000 genomes]
rs4354051	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4507492	0.84[AFR][1000 genomes]
rs4543275	1.00[ASN][1000 genomes]
rs4563636	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4597977	0.88[ASN][1000 genomes]
rs4615307	0.98[ASN][1000 genomes]
rs4866756	0.86[ASN][1000 genomes]
rs4866757	0.85[ASN][1000 genomes]
rs4866760	0.86[ASN][1000 genomes]
rs4866845	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4866852	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4866853	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56094704	0.88[AFR][1000 genomes]
rs56337432	0.85[ASN][1000 genomes]
rs56403488	0.95[AFR][1000 genomes]
rs58731744	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59751856	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59860030	0.84[AFR][1000 genomes]
rs6451736	0.93[AFR][1000 genomes]
rs6451737	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6451741	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67443644	0.85[ASN][1000 genomes]
rs67991400	0.86[ASN][1000 genomes]
rs6859597	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6860169	0.88[AFR][1000 genomes]
rs6860696	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6869533	0.84[AFR][1000 genomes]
rs6870141	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6876807	0.84[AFR][1000 genomes]
rs6880063	0.84[AFR][1000 genomes]
rs6882508	0.88[ASN][1000 genomes]
rs6886184	0.88[AFR][1000 genomes]
rs6886270	0.88[AFR][1000 genomes]
rs6886917	0.84[AFR][1000 genomes]
rs6886955	0.84[AFR][1000 genomes]
rs6887519	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6888119	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs71631110	0.85[ASN][1000 genomes]
rs71631119	0.88[ASN][1000 genomes]
rs71631120	0.86[ASN][1000 genomes]
rs71631121	0.85[ASN][1000 genomes]
rs71631187	0.87[ASN][1000 genomes]
rs71631189	0.90[ASN][1000 genomes]
rs71633107	1.00[ASN][1000 genomes]
rs71633109	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71633110	0.98[ASN][1000 genomes]
rs72748180	0.91[AFR][1000 genomes]
rs72748183	0.91[AFR][1000 genomes]
rs73753694	0.83[ASN][1000 genomes]
rs7714254	0.85[ASN][1000 genomes]
rs7721923	0.87[ASN][1000 genomes]
rs7730331	0.88[ASN][1000 genomes]
rs7731350	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9800184	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830374	chr5:43785548-44341631	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1019047	chr5:43939693-44301657	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv830276	chr5:43951430-44150855	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43993800-43998000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr5:43994200-43997800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:43994400-43997600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr5:43994400-43997800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:43995000-43997600	Weak transcription	Fetal Lung	lung
6	chr5:43997000-43997800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr5:43997000-43997800	Enhancers	Hela-S3	cervix
8	chr5:43997000-43998000	Enhancers	Pancreas	Pancrea
9	chr5:43997000-43999200	Enhancers	Ovary	ovary
10	chr5:43997200-43999200	Enhancers	Liver	Liver
11	chr5:43997400-43997800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr5:43997400-43997800	Flanking Active TSS	HepG2	liver
13	chr5:43997400-43998000	Enhancers	NHLF	lung
14	chr5:43997400-43998200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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