Variant report

Variant	rs6888119
Chromosome Location	chr5:43973537-43973538
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs10461751	0.94[ASN][1000 genomes]
rs13155063	0.98[ASN][1000 genomes]
rs13157839	0.90[ASN][1000 genomes]
rs13159468	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13162787	0.92[ASN][1000 genomes]
rs13163941	0.93[ASN][1000 genomes]
rs13171334	0.92[ASN][1000 genomes]
rs13175096	0.93[ASN][1000 genomes]
rs13182333	0.94[ASN][1000 genomes]
rs13184580	0.94[ASN][1000 genomes]
rs13186056	0.94[ASN][1000 genomes]
rs13189575	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34048286	0.94[ASN][1000 genomes]
rs34053815	0.93[ASN][1000 genomes]
rs34085387	0.92[ASN][1000 genomes]
rs34136561	0.92[ASN][1000 genomes]
rs34157568	0.89[ASN][1000 genomes]
rs34338792	0.94[ASN][1000 genomes]
rs34371282	0.94[ASN][1000 genomes]
rs34464981	0.97[ASN][1000 genomes]
rs34518294	0.92[ASN][1000 genomes]
rs34528370	0.93[ASN][1000 genomes]
rs34579696	0.93[ASN][1000 genomes]
rs34601610	0.91[ASN][1000 genomes]
rs34602870	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34632546	1.00[ASN][1000 genomes]
rs34685647	0.99[ASN][1000 genomes]
rs34758083	0.94[ASN][1000 genomes]
rs34782313	0.92[ASN][1000 genomes]
rs34843393	0.93[ASN][1000 genomes]
rs35013918	0.94[ASN][1000 genomes]
rs35029702	0.91[ASN][1000 genomes]
rs35092969	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35140592	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35162434	0.92[ASN][1000 genomes]
rs35182890	0.94[ASN][1000 genomes]
rs35208539	0.92[ASN][1000 genomes]
rs35289692	0.90[ASN][1000 genomes]
rs35374202	0.94[ASN][1000 genomes]
rs35430857	0.94[ASN][1000 genomes]
rs35529195	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35696398	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35697247	0.92[ASN][1000 genomes]
rs35730404	0.94[ASN][1000 genomes]
rs35789639	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35792109	0.92[ASN][1000 genomes]
rs35798472	0.89[ASN][1000 genomes]
rs35939121	0.88[ASN][1000 genomes]
rs35970538	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs36030354	0.92[ASN][1000 genomes]
rs36030928	0.91[ASN][1000 genomes]
rs36062010	0.90[ASN][1000 genomes]
rs4354051	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4543275	0.93[ASN][1000 genomes]
rs4563636	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4597977	0.94[ASN][1000 genomes]
rs4615307	0.91[ASN][1000 genomes]
rs4866756	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4866757	0.92[ASN][1000 genomes]
rs4866760	0.93[ASN][1000 genomes]
rs4866845	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4866852	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4866853	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56337432	0.92[ASN][1000 genomes]
rs58731744	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59751856	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6451737	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6451741	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67443644	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs67991400	0.93[ASN][1000 genomes]
rs6859597	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6860696	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6864990	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6870141	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6882508	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6887519	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs71631110	0.92[ASN][1000 genomes]
rs71631119	0.94[ASN][1000 genomes]
rs71631120	0.93[ASN][1000 genomes]
rs71631121	0.92[ASN][1000 genomes]
rs71631187	0.93[ASN][1000 genomes]
rs71631189	0.97[ASN][1000 genomes]
rs71633107	0.93[ASN][1000 genomes]
rs71633109	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs71633110	0.91[ASN][1000 genomes]
rs73753694	0.90[ASN][1000 genomes]
rs7714254	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7721923	0.93[ASN][1000 genomes]
rs7730331	0.94[ASN][1000 genomes]
rs7731350	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9800184	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830374	chr5:43785548-44341631	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1019047	chr5:43939693-44301657	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv830276	chr5:43951430-44150855	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43972000-43974600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr5:43973000-43973600	Enhancers	Hela-S3	cervix
3	chr5:43973000-43974400	Enhancers	Liver	Liver
4	chr5:43973200-43973600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr5:43973200-43973800	Enhancers	Adipose Nuclei	Adipose
6	chr5:43973200-43973800	Enhancers	HepG2	liver

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