Variant report

Variant	rs6887519
Chromosome Location	chr5:44040594-44040595
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 112 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:109)

rs_ID	r²[population]
rs10461751	0.83[ASN][1000 genomes]
rs13155063	0.89[ASN][1000 genomes]
rs13157839	0.99[ASN][1000 genomes]
rs13159468	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13162787	0.81[ASN][1000 genomes]
rs13163941	0.95[ASN][1000 genomes]
rs13171334	0.81[ASN][1000 genomes]
rs13175096	0.95[ASN][1000 genomes]
rs13182333	0.83[ASN][1000 genomes]
rs13184580	0.83[ASN][1000 genomes]
rs13186056	0.83[ASN][1000 genomes]
rs13189575	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34048286	0.83[ASN][1000 genomes]
rs34053815	0.82[ASN][1000 genomes]
rs34085387	0.81[ASN][1000 genomes]
rs34136561	0.81[ASN][1000 genomes]
rs34157568	1.00[ASN][1000 genomes]
rs34338792	0.83[ASN][1000 genomes]
rs34371282	0.83[ASN][1000 genomes]
rs34464981	0.85[ASN][1000 genomes]
rs34518294	0.81[ASN][1000 genomes]
rs34528370	0.95[ASN][1000 genomes]
rs34579696	0.95[ASN][1000 genomes]
rs34601610	0.98[ASN][1000 genomes]
rs34602870	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34632546	0.89[ASN][1000 genomes]
rs34685647	0.88[ASN][1000 genomes]
rs34758083	0.83[ASN][1000 genomes]
rs34782313	0.81[ASN][1000 genomes]
rs34843393	0.95[ASN][1000 genomes]
rs34989022	0.97[AFR][1000 genomes]
rs35013918	0.83[ASN][1000 genomes]
rs35029702	0.80[ASN][1000 genomes]
rs35092969	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35140592	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35162434	0.81[ASN][1000 genomes]
rs35182890	0.83[ASN][1000 genomes]
rs35208539	0.81[ASN][1000 genomes]
rs35374202	0.83[ASN][1000 genomes]
rs35430857	0.83[ASN][1000 genomes]
rs35529195	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35696398	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35697247	0.81[ASN][1000 genomes]
rs35730404	0.83[ASN][1000 genomes]
rs35789639	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35792109	0.81[ASN][1000 genomes]
rs35798472	1.00[ASN][1000 genomes]
rs35939121	0.94[ASN][1000 genomes]
rs35970538	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs36030354	0.81[ASN][1000 genomes]
rs36030928	0.93[ASN][1000 genomes]
rs4291019	0.84[ASN][1000 genomes]
rs4354051	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4507492	0.91[AFR][1000 genomes]
rs4543275	0.95[ASN][1000 genomes]
rs4563636	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4597977	0.83[ASN][1000 genomes]
rs4615307	0.98[ASN][1000 genomes]
rs4866756	0.82[ASN][1000 genomes]
rs4866757	0.81[ASN][1000 genomes]
rs4866760	0.86[ASN][1000 genomes]
rs4866845	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4866852	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4866853	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56094704	0.95[AFR][1000 genomes]
rs56337432	0.81[ASN][1000 genomes]
rs56403488	0.88[AFR][1000 genomes]
rs58731744	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59751856	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59860030	0.99[AFR][1000 genomes]
rs6451736	0.86[AFR][1000 genomes]
rs6451737	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6451741	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67443644	0.81[ASN][1000 genomes]
rs67991400	0.82[ASN][1000 genomes]
rs6859597	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6860169	0.95[AFR][1000 genomes]
rs6860696	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6864990	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6869533	0.99[AFR][1000 genomes]
rs6870141	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6875608	0.92[AFR][1000 genomes]
rs6876807	0.99[AFR][1000 genomes]
rs6880063	0.99[AFR][1000 genomes]
rs6882508	0.83[ASN][1000 genomes]
rs6886184	0.95[AFR][1000 genomes]
rs6886270	0.95[AFR][1000 genomes]
rs6886917	0.99[AFR][1000 genomes]
rs6886955	0.99[AFR][1000 genomes]
rs6888119	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs71631110	0.81[ASN][1000 genomes]
rs71631119	0.83[ASN][1000 genomes]
rs71631120	0.82[ASN][1000 genomes]
rs71631121	0.81[ASN][1000 genomes]
rs71631187	0.82[ASN][1000 genomes]
rs71631189	0.85[ASN][1000 genomes]
rs71633107	0.95[ASN][1000 genomes]
rs71633109	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71633110	0.98[ASN][1000 genomes]
rs72748180	0.82[AFR][1000 genomes]
rs72748183	0.92[AFR][1000 genomes]
rs72750167	0.94[AFR][1000 genomes]
rs73753694	0.83[ASN][1000 genomes]
rs7714254	0.81[ASN][1000 genomes]
rs7721923	0.83[ASN][1000 genomes]
rs7730331	0.83[ASN][1000 genomes]
rs7731350	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9687508	0.91[AFR][1000 genomes]
rs9800184	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830374	chr5:43785548-44341631	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1019047	chr5:43939693-44301657	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv830276	chr5:43951430-44150855	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:44036600-44041000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:44040400-44041400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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