Variant report

Variant	rs35555406
Chromosome Location	chr5:43884158-43884159
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs10039531	0.82[ASN][1000 genomes]
rs10045029	0.82[ASN][1000 genomes]
rs10059603	0.84[ASN][1000 genomes]
rs10061100	1.00[ASN][1000 genomes]
rs10062920	0.80[ASN][1000 genomes]
rs10065107	0.87[ASN][1000 genomes]
rs10461747	0.80[ASN][1000 genomes]
rs10461748	0.80[ASN][1000 genomes]
rs10462056	0.80[ASN][1000 genomes]
rs10462057	0.80[ASN][1000 genomes]
rs10472388	0.80[ASN][1000 genomes]
rs12697461	0.87[ASN][1000 genomes]
rs12697462	0.87[ASN][1000 genomes]
rs13155241	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13157400	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs13159427	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13161165	0.82[ASN][1000 genomes]
rs13163981	0.82[ASN][1000 genomes]
rs13166767	0.97[ASN][1000 genomes]
rs13170221	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs13178040	0.80[ASN][1000 genomes]
rs13178059	0.82[ASN][1000 genomes]
rs13182721	0.80[ASN][1000 genomes]
rs13184125	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13184624	1.00[ASN][1000 genomes]
rs13184706	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13184712	0.80[ASN][1000 genomes]
rs13184793	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13185888	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13185925	1.00[ASN][1000 genomes]
rs13186729	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13187446	0.80[ASN][1000 genomes]
rs13188204	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13189727	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13357293	0.82[ASN][1000 genomes]
rs13361045	0.80[ASN][1000 genomes]
rs34028586	0.80[ASN][1000 genomes]
rs34157568	1.00[AFR][1000 genomes]
rs34184759	0.80[ASN][1000 genomes]
rs34250207	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34315545	0.87[ASN][1000 genomes]
rs34378343	0.87[ASN][1000 genomes]
rs34557417	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs34748969	0.82[ASN][1000 genomes]
rs34871596	0.83[ASN][1000 genomes]
rs34898039	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs34928490	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs34930147	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35151191	0.80[ASN][1000 genomes]
rs35228179	0.82[ASN][1000 genomes]
rs35249562	0.80[ASN][1000 genomes]
rs35592802	0.82[ASN][1000 genomes]
rs35667947	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs35672591	0.80[ASN][1000 genomes]
rs35684072	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35687864	0.82[ASN][1000 genomes]
rs35696038	0.85[ASN][1000 genomes]
rs35773128	0.82[ASN][1000 genomes]
rs35798472	1.00[AFR][1000 genomes]
rs35842681	0.80[ASN][1000 genomes]
rs3884574	0.82[ASN][1000 genomes]
rs3884575	0.82[ASN][1000 genomes]
rs4318792	0.82[ASN][1000 genomes]
rs4403180	0.80[ASN][1000 genomes]
rs4449542	0.82[ASN][1000 genomes]
rs4484444	0.87[ASN][1000 genomes]
rs4493678	0.80[ASN][1000 genomes]
rs4615307	1.00[AFR][1000 genomes]
rs62368641	0.80[ASN][1000 genomes]
rs62368655	0.80[ASN][1000 genomes]
rs62369476	0.80[ASN][1000 genomes]
rs6868008	0.85[ASN][1000 genomes]
rs6869748	0.85[ASN][1000 genomes]
rs6871373	0.99[ASN][1000 genomes]
rs6874033	0.80[ASN][1000 genomes]
rs6875365	0.87[ASN][1000 genomes]
rs6875400	0.87[ASN][1000 genomes]
rs6882574	0.99[ASN][1000 genomes]
rs6892300	0.80[ASN][1000 genomes]
rs6897045	0.85[ASN][1000 genomes]
rs6897559	0.82[ASN][1000 genomes]
rs71631107	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs71631108	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72762386	1.00[ASN][1000 genomes]
rs73753650	0.87[ASN][1000 genomes]
rs73753651	0.87[ASN][1000 genomes]
rs73753652	0.87[ASN][1000 genomes]
rs7713856	0.82[ASN][1000 genomes]
rs7715954	1.00[ASN][1000 genomes]
rs7721405	0.87[ASN][1000 genomes]
rs7723874	0.85[ASN][1000 genomes]
rs7724013	0.99[ASN][1000 genomes]
rs7724195	0.82[ASN][1000 genomes]
rs7729400	1.00[ASN][1000 genomes]
rs9292896	0.82[ASN][1000 genomes]
rs9784611	0.85[ASN][1000 genomes]
rs9918185	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830374	chr5:43785548-44341631	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv965549	chr5:43877737-43886194	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43879600-43885200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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