Variant report

Variant	rs6882574
Chromosome Location	chr5:43875744-43875745
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs10039531	0.83[ASN][1000 genomes]
rs10045029	0.83[ASN][1000 genomes]
rs10050537	0.94[AFR][1000 genomes]
rs10059603	0.85[ASN][1000 genomes]
rs10061100	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10062920	0.81[ASN][1000 genomes]
rs10065107	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10069201	0.89[JPT][hapmap]
rs10461747	0.81[ASN][1000 genomes]
rs10461748	0.81[ASN][1000 genomes]
rs10462056	0.81[ASN][1000 genomes]
rs10462057	0.81[ASN][1000 genomes]
rs10472388	0.81[ASN][1000 genomes]
rs12697461	0.89[ASN][1000 genomes]
rs12697462	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13155241	1.00[ASN][1000 genomes]
rs13159427	0.99[ASN][1000 genomes]
rs13161165	0.83[ASN][1000 genomes]
rs13163981	0.83[ASN][1000 genomes]
rs13166767	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13178040	0.81[ASN][1000 genomes]
rs13178059	0.83[ASN][1000 genomes]
rs13182721	0.81[ASN][1000 genomes]
rs13184624	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13184706	0.99[ASN][1000 genomes]
rs13184712	0.81[ASN][1000 genomes]
rs13184793	0.99[ASN][1000 genomes]
rs13185888	0.99[ASN][1000 genomes]
rs13185925	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs13186729	0.99[ASN][1000 genomes]
rs13187446	0.81[ASN][1000 genomes]
rs13188204	1.00[ASN][1000 genomes]
rs13189727	0.99[ASN][1000 genomes]
rs13357293	0.83[ASN][1000 genomes]
rs13359520	0.94[AFR][1000 genomes]
rs13361045	0.81[ASN][1000 genomes]
rs16873502	1.00[JPT][hapmap]
rs34028586	0.81[ASN][1000 genomes]
rs34184759	0.81[ASN][1000 genomes]
rs34250207	0.99[ASN][1000 genomes]
rs34315545	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34378343	0.89[ASN][1000 genomes]
rs34748969	0.83[ASN][1000 genomes]
rs34814715	0.80[ASN][1000 genomes]
rs34871596	0.85[ASN][1000 genomes]
rs34930147	1.00[ASN][1000 genomes]
rs35151191	0.81[ASN][1000 genomes]
rs35228179	0.83[ASN][1000 genomes]
rs35249562	0.81[ASN][1000 genomes]
rs35388758	0.80[ASN][1000 genomes]
rs35555406	0.99[ASN][1000 genomes]
rs35592802	0.83[ASN][1000 genomes]
rs35672591	0.81[ASN][1000 genomes]
rs35684072	0.99[ASN][1000 genomes]
rs35687864	0.83[ASN][1000 genomes]
rs35696038	0.86[ASN][1000 genomes]
rs35773128	0.83[ASN][1000 genomes]
rs35842681	0.81[ASN][1000 genomes]
rs3884574	0.83[ASN][1000 genomes]
rs3884575	0.83[ASN][1000 genomes]
rs4318792	0.83[ASN][1000 genomes]
rs4403180	0.81[ASN][1000 genomes]
rs4449542	0.83[ASN][1000 genomes]
rs4484444	0.89[ASN][1000 genomes]
rs4493678	0.81[ASN][1000 genomes]
rs59447348	0.92[AFR][1000 genomes]
rs62368641	0.81[ASN][1000 genomes]
rs62368655	0.81[ASN][1000 genomes]
rs62369476	0.81[ASN][1000 genomes]
rs62369480	0.80[ASN][1000 genomes]
rs6862256	0.89[AFR][1000 genomes]
rs6868008	0.93[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs6869748	0.86[ASN][1000 genomes]
rs6871373	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6874033	0.81[ASN][1000 genomes]
rs6875365	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6875400	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6892300	0.81[ASN][1000 genomes]
rs6897045	0.86[ASN][1000 genomes]
rs6897559	0.83[ASN][1000 genomes]
rs71631108	0.99[ASN][1000 genomes]
rs716960	0.89[JPT][hapmap]
rs72762386	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73753650	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73753651	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73753652	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7713856	0.83[ASN][1000 genomes]
rs7715954	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7721405	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7723677	1.00[YRI][hapmap];0.99[AFR][1000 genomes]
rs7723874	0.86[ASN][1000 genomes]
rs7724013	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7724195	0.83[ASN][1000 genomes]
rs7729400	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7732326	0.94[AFR][1000 genomes]
rs9292896	0.83[ASN][1000 genomes]
rs9784611	0.86[ASN][1000 genomes]
rs9918185	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830374	chr5:43785548-44341631	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43874400-43876200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr5:43874400-43876200	Enhancers	Fetal Heart	heart
3	chr5:43874600-43876200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:43874800-43876200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr5:43875200-43876000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr5:43875400-43876200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr5:43875400-43878600	Weak transcription	Fetal Lung	lung

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