Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10050537	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10061100	0.94[AFR][1000 genomes]
rs13359520	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56242250	0.88[EUR][1000 genomes]
rs56286610	0.88[EUR][1000 genomes]
rs56407158	0.86[EUR][1000 genomes]
rs6862256	0.84[AFR][1000 genomes]
rs6868008	0.85[AFR][1000 genomes]
rs6871373	0.92[AFR][1000 genomes]
rs6882574	0.92[AFR][1000 genomes]
rs72762320	0.86[EUR][1000 genomes]
rs72762321	0.88[EUR][1000 genomes]
rs72762323	0.88[EUR][1000 genomes]
rs72762325	0.88[EUR][1000 genomes]
rs72762385	0.86[EUR][1000 genomes]
rs72762386	0.97[AFR][1000 genomes]
rs72762387	0.86[EUR][1000 genomes]
rs7703953	0.88[EUR][1000 genomes]
rs7715954	0.99[AFR][1000 genomes]
rs7723677	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7724013	0.87[AFR][1000 genomes]
rs7728182	1.00[EUR][1000 genomes]
rs7729400	0.97[AFR][1000 genomes]
rs7732326	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830374	chr5:43785548-44341631	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv965549	chr5:43877737-43886194	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs59447348	NNT	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43879600-43885200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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