Variant report

Variant	rs72762323
Chromosome Location	chr5:43873833-43873834
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10050537	0.88[EUR][1000 genomes]
rs13166767	0.91[AFR][1000 genomes]
rs13359520	0.88[EUR][1000 genomes]
rs56242250	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56286610	1.00[EUR][1000 genomes]
rs56407158	0.97[EUR][1000 genomes]
rs59447348	0.88[EUR][1000 genomes]
rs72762320	0.97[EUR][1000 genomes]
rs72762321	1.00[EUR][1000 genomes]
rs72762325	1.00[EUR][1000 genomes]
rs72762385	0.97[EUR][1000 genomes]
rs72762387	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7703953	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7723677	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7728182	0.88[EUR][1000 genomes]
rs7732326	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830374	chr5:43785548-44341631	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43869800-43875000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr5:43871000-43874400	Weak transcription	Fetal Heart	heart
3	chr5:43871200-43874400	Weak transcription	Fetal Lung	lung
4	chr5:43871200-43874800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr5:43873600-43875000	Enhancers	Placenta	Placenta

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links