Variant report

Variant	rs72762387
Chromosome Location	chr5:43888556-43888557
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10050537	0.86[EUR][1000 genomes]
rs13166767	0.98[AFR][1000 genomes]
rs13185925	0.87[AFR][1000 genomes]
rs13359520	0.86[EUR][1000 genomes]
rs56242250	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56286610	0.97[EUR][1000 genomes]
rs56407158	0.95[EUR][1000 genomes]
rs59447348	0.86[EUR][1000 genomes]
rs72762320	0.95[EUR][1000 genomes]
rs72762321	0.97[EUR][1000 genomes]
rs72762323	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72762325	0.97[EUR][1000 genomes]
rs72762385	1.00[EUR][1000 genomes]
rs7703953	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7723677	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7728182	0.86[EUR][1000 genomes]
rs7732326	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830374	chr5:43785548-44341631	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43888000-43889400	Enhancers	Placenta Amnion	Placenta Amnion
2	chr5:43888200-43889800	Enhancers	Fetal Stomach	stomach
3	chr5:43888400-43891800	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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