The 2.0 version of rSNPBase

Variant report

Variant rs716960
Chromosome Location chr5:43705791-43705792
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:89 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:43659600-43706200 Weak transcription Small Intestine intestine
2 chr5:43659600-43710000 Weak transcription Ovary ovary
3 chr5:43661000-43711400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
4 chr5:43675200-43711400 Weak transcription NH-A brain
5 chr5:43680800-43715400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
6 chr5:43684200-43715400 Weak transcription Stomach Smooth Muscle stomach
7 chr5:43684800-43714600 Weak transcription Aorta Aorta
8 chr5:43685800-43705800 Weak transcription Rectal Smooth Muscle rectum
9 chr5:43686200-43711400 Weak transcription Muscle Satellite Cultured Cells --
10 chr5:43695800-43707000 Weak transcription K562 blood
11 chr5:43695800-43711400 Weak transcription Right Ventricle heart
12 chr5:43696000-43707200 Weak transcription Rectal Mucosa Donor 29 rectum
13 chr5:43696800-43711600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
14 chr5:43697000-43705800 Weak transcription Fetal Brain Female brain
15 chr5:43697000-43705800 Weak transcription Spleen Spleen
16 chr5:43697000-43706000 Strong transcription Primary B cells from peripheral blood blood
17 chr5:43697000-43706000 Weak transcription Fetal Stomach stomach
18 chr5:43697000-43706200 Weak transcription Brain Substantia Nigra brain
19 chr5:43697000-43706200 Weak transcription Esophagus oesophagus
20 chr5:43697000-43710800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
21 chr5:43697000-43711400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
22 chr5:43697000-43715000 Weak transcription Brain Cingulate Gyrus brain
23 chr5:43697200-43711400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
24 chr5:43698600-43707400 Weak transcription Thymus Thymus
25 chr5:43699200-43706000 Strong transcription Primary T helper cells fromperipheralblood blood
26 chr5:43699400-43706000 Strong transcription Primary T cells from cord blood blood
27 chr5:43699800-43705800 Strong transcription Dnd41 blood
28 chr5:43700000-43706200 Strong transcription Primary T helper cells PMA-I stimulated --
29 chr5:43700000-43706200 Strong transcription Monocytes-CD14+_RO01746 blood
30 chr5:43700200-43705800 Strong transcription Primary monocytes fromperipheralblood blood
31 chr5:43700200-43706200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
32 chr5:43700200-43706400 Strong transcription Primary Natural Killer cells fromperipheralblood blood
33 chr5:43700400-43709200 Weak transcription Pancreas Pancrea
34 chr5:43700600-43711400 Weak transcription HUES6 Cell Line embryonic stem cell
35 chr5:43700800-43706800 Strong transcription Primary hematopoietic stem cells short term culture blood
36 chr5:43701400-43705800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
37 chr5:43701400-43706000 Strong transcription Primary T helper naive cells fromperipheralblood blood
38 chr5:43701600-43706000 Weak transcription GM12878-XiMat blood
39 chr5:43701600-43711600 Weak transcription HSMMtube muscle
40 chr5:43701800-43706200 Weak transcription Sigmoid Colon Sigmoid Colon
41 chr5:43701800-43709800 Weak transcription Breast Myoepithelial Primary Cells Breast
42 chr5:43702200-43711400 Weak transcription Placenta Placenta
43 chr5:43702400-43705800 Strong transcription Primary neutrophils fromperipheralblood blood
44 chr5:43702800-43706000 Strong transcription Primary T killer naive cells fromperipheralblood blood
45 chr5:43702800-43706000 Strong transcription Skeletal Muscle Female skeletal muscle
46 chr5:43702800-43706800 Strong transcription Liver Liver
47 chr5:43703200-43706000 Strong transcription Primary T helper 17 cells PMA-I stimulated --
48 chr5:43703200-43706000 Weak transcription Cortex derived primary cultured neurospheres brain
49 chr5:43703200-43706200 Weak transcription Fetal Intestine Large intestine
50 chr5:43703200-43706200 Weak transcription Fetal Muscle Leg muscle

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Last update: Aug 31, 2015