The 2.0 version of rSNPBase

Variant report

Variant rs34289650
Chromosome Location chr5:43706354-43706355
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:76 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:43659600-43710000 Weak transcription Ovary ovary
2 chr5:43661000-43711400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
3 chr5:43675200-43711400 Weak transcription NH-A brain
4 chr5:43680800-43715400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
5 chr5:43684200-43715400 Weak transcription Stomach Smooth Muscle stomach
6 chr5:43684800-43714600 Weak transcription Aorta Aorta
7 chr5:43686200-43711400 Weak transcription Muscle Satellite Cultured Cells --
8 chr5:43695800-43707000 Weak transcription K562 blood
9 chr5:43695800-43711400 Weak transcription Right Ventricle heart
10 chr5:43696000-43707200 Weak transcription Rectal Mucosa Donor 29 rectum
11 chr5:43696800-43711600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
12 chr5:43697000-43710800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
13 chr5:43697000-43711400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
14 chr5:43697000-43715000 Weak transcription Brain Cingulate Gyrus brain
15 chr5:43697200-43711400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
16 chr5:43698600-43707400 Weak transcription Thymus Thymus
17 chr5:43700200-43706400 Strong transcription Primary Natural Killer cells fromperipheralblood blood
18 chr5:43700400-43709200 Weak transcription Pancreas Pancrea
19 chr5:43700600-43711400 Weak transcription HUES6 Cell Line embryonic stem cell
20 chr5:43700800-43706800 Strong transcription Primary hematopoietic stem cells short term culture blood
21 chr5:43701600-43711600 Weak transcription HSMMtube muscle
22 chr5:43701800-43709800 Weak transcription Breast Myoepithelial Primary Cells Breast
23 chr5:43702200-43711400 Weak transcription Placenta Placenta
24 chr5:43702800-43706800 Strong transcription Liver Liver
25 chr5:43703200-43706800 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
26 chr5:43703200-43710600 Weak transcription Psoas Muscle Psoas
27 chr5:43703400-43708200 Weak transcription Primary T killer memory cells from peripheral blood blood
28 chr5:43703400-43708200 Weak transcription Duodenum Smooth Muscle Duodenum
29 chr5:43703400-43709600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
30 chr5:43703400-43709600 Weak transcription Colon Smooth Muscle Colon
31 chr5:43703400-43711400 Weak transcription NHDF-Ad bronchial
32 chr5:43703400-43711400 Weak transcription NHLF lung
33 chr5:43703400-43712800 Weak transcription Brain Anterior Caudate brain
34 chr5:43704000-43711000 Weak transcription Hela-S3 cervix
35 chr5:43704400-43711800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
36 chr5:43704600-43707400 Weak transcription Primary B cells from cord blood blood
37 chr5:43704600-43707400 Weak transcription Lung lung
38 chr5:43704600-43708400 Weak transcription Duodenum Mucosa Duodenum
39 chr5:43704600-43709800 Weak transcription HUVEC blood vessel
40 chr5:43704600-43711600 Weak transcription Osteobl bone
41 chr5:43704800-43707200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
42 chr5:43704800-43707200 Weak transcription Fetal Thymus thymus
43 chr5:43704800-43715200 Weak transcription Fetal Muscle Trunk muscle
44 chr5:43705000-43711600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
45 chr5:43705000-43715600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
46 chr5:43705200-43706800 Weak transcription Primary T regulatory cells fromperipheralblood blood
47 chr5:43705400-43711400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
48 chr5:43705600-43707200 Weak transcription Primary T cells fromperipheralblood blood
49 chr5:43705600-43708000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
50 chr5:43705600-43708200 Weak transcription Primary T helper naive cells from peripheral blood blood

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Last update: Aug 31, 2015