The 2.0 version of rSNPBase

Variant report

Variant rs12332274
Chromosome Location chr5:43701596-43701597
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:98 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:43659600-43706200 Weak transcription Small Intestine intestine
2 chr5:43659600-43710000 Weak transcription Ovary ovary
3 chr5:43661000-43702800 Weak transcription Primary T helper naive cells from peripheral blood blood
4 chr5:43661000-43711400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
5 chr5:43665200-43702400 Weak transcription Fetal Heart heart
6 chr5:43667000-43703200 Weak transcription Colonic Mucosa Colon
7 chr5:43675200-43711400 Weak transcription NH-A brain
8 chr5:43676400-43703200 Weak transcription Osteobl bone
9 chr5:43679000-43703600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
10 chr5:43679200-43702800 Weak transcription HUVEC blood vessel
11 chr5:43680800-43702400 Weak transcription Hela-S3 cervix
12 chr5:43680800-43715400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
13 chr5:43681000-43703000 Weak transcription HSMM muscle
14 chr5:43684200-43702800 Weak transcription Duodenum Smooth Muscle Duodenum
15 chr5:43684200-43715400 Weak transcription Stomach Smooth Muscle stomach
16 chr5:43684800-43714600 Weak transcription Aorta Aorta
17 chr5:43685800-43705800 Weak transcription Rectal Smooth Muscle rectum
18 chr5:43686000-43702200 Weak transcription Brain Hippocampus Middle brain
19 chr5:43686000-43703000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
20 chr5:43686000-43703000 Weak transcription Brain Anterior Caudate brain
21 chr5:43686200-43711400 Weak transcription Muscle Satellite Cultured Cells --
22 chr5:43688000-43702800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
23 chr5:43688400-43702800 Weak transcription NHDF-Ad bronchial
24 chr5:43694400-43702400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
25 chr5:43695800-43702800 Weak transcription Primary T killer naive cells fromperipheralblood blood
26 chr5:43695800-43707000 Weak transcription K562 blood
27 chr5:43695800-43711400 Weak transcription Right Ventricle heart
28 chr5:43696000-43702800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
29 chr5:43696000-43703200 Weak transcription Pancreatic Islets Pancreatic Islet
30 chr5:43696000-43707200 Weak transcription Rectal Mucosa Donor 29 rectum
31 chr5:43696200-43702800 Weak transcription Fetal Muscle Trunk muscle
32 chr5:43696800-43702400 Weak transcription Primary neutrophils fromperipheralblood blood
33 chr5:43696800-43711600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
34 chr5:43697000-43702400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
35 chr5:43697000-43702400 Weak transcription Cortex derived primary cultured neurospheres brain
36 chr5:43697000-43702400 Weak transcription Duodenum Mucosa Duodenum
37 chr5:43697000-43702800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
38 chr5:43697000-43702800 Weak transcription Brain Inferior Temporal Lobe brain
39 chr5:43697000-43702800 Weak transcription Fetal Intestine Large intestine
40 chr5:43697000-43703000 Weak transcription Rectal Mucosa Donor 31 rectum
41 chr5:43697000-43704200 Weak transcription Gastric stomach
42 chr5:43697000-43704200 Weak transcription Lung lung
43 chr5:43697000-43704400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
44 chr5:43697000-43705800 Weak transcription Fetal Brain Female brain
45 chr5:43697000-43705800 Weak transcription Spleen Spleen
46 chr5:43697000-43706000 Strong transcription Primary B cells from peripheral blood blood
47 chr5:43697000-43706000 Weak transcription Fetal Stomach stomach
48 chr5:43697000-43706200 Weak transcription Brain Substantia Nigra brain
49 chr5:43697000-43706200 Weak transcription Esophagus oesophagus
50 chr5:43697000-43710800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain

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Last update: Aug 31, 2015