The 2.0 version of rSNPBase

Variant report

Variant rs6875118
Chromosome Location chr5:43673924-43673925
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:98 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:43650200-43685400 Weak transcription Brain Cingulate Gyrus brain
2 chr5:43650800-43676200 Weak transcription Brain Anterior Caudate brain
3 chr5:43653000-43675600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
4 chr5:43653400-43674200 Weak transcription HSMMtube muscle
5 chr5:43657000-43674400 Weak transcription Pancreas Pancrea
6 chr5:43657600-43676200 Weak transcription Primary T killer memory cells from peripheral blood blood
7 chr5:43657600-43695200 Weak transcription K562 blood
8 chr5:43659400-43696800 Weak transcription Gastric stomach
9 chr5:43659600-43675400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
10 chr5:43659600-43678200 Weak transcription Brain Hippocampus Middle brain
11 chr5:43659600-43680400 Weak transcription Psoas Muscle Psoas
12 chr5:43659600-43706200 Weak transcription Small Intestine intestine
13 chr5:43659600-43710000 Weak transcription Ovary ovary
14 chr5:43660000-43685600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
15 chr5:43660200-43684800 Weak transcription HUES48 Cell Line embryonic stem cell
16 chr5:43661000-43675600 Weak transcription Primary T cells from cord blood blood
17 chr5:43661000-43675600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
18 chr5:43661000-43675600 Weak transcription Fetal Kidney kidney
19 chr5:43661000-43675600 Weak transcription Left Ventricle heart
20 chr5:43661000-43676200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
21 chr5:43661000-43677000 Weak transcription Brain Angular Gyrus brain
22 chr5:43661000-43677000 Weak transcription Rectal Smooth Muscle rectum
23 chr5:43661000-43680400 Weak transcription Brain Inferior Temporal Lobe brain
24 chr5:43661000-43680400 Weak transcription Brain Substantia Nigra brain
25 chr5:43661000-43680400 Weak transcription Rectal Mucosa Donor 31 rectum
26 chr5:43661000-43680400 Weak transcription Skeletal Muscle Male skeletal muscle
27 chr5:43661000-43680400 Weak transcription Skeletal Muscle Female skeletal muscle
28 chr5:43661000-43680600 Weak transcription Rectal Mucosa Donor 29 rectum
29 chr5:43661000-43682400 Weak transcription Fetal Muscle Leg muscle
30 chr5:43661000-43682600 Weak transcription Primary neutrophils fromperipheralblood blood
31 chr5:43661000-43683200 Weak transcription Duodenum Smooth Muscle Duodenum
32 chr5:43661000-43695600 Weak transcription Primary T killer naive cells fromperipheralblood blood
33 chr5:43661000-43702800 Weak transcription Primary T helper naive cells from peripheral blood blood
34 chr5:43661000-43711400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
35 chr5:43661200-43678400 Weak transcription HUVEC blood vessel
36 chr5:43661600-43675600 Weak transcription Primary T helper cells PMA-I stimulated --
37 chr5:43662400-43675400 Weak transcription Hela-S3 cervix
38 chr5:43664000-43674200 Weak transcription Primary B cells from cord blood blood
39 chr5:43664000-43676200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
40 chr5:43664600-43675800 Weak transcription Liver Liver
41 chr5:43664800-43699800 Weak transcription Colon Smooth Muscle Colon
42 chr5:43665200-43674200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
43 chr5:43665200-43674200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
44 chr5:43665200-43674200 Weak transcription Muscle Satellite Cultured Cells --
45 chr5:43665200-43674400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
46 chr5:43665200-43675600 Weak transcription Primary T helper cells fromperipheralblood blood
47 chr5:43665200-43676000 Weak transcription Primary T regulatory cells fromperipheralblood blood
48 chr5:43665200-43688600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
49 chr5:43665200-43690400 Weak transcription Fetal Lung lung
50 chr5:43665200-43702400 Weak transcription Fetal Heart heart

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Last update: Aug 31, 2015