The 2.0 version of rSNPBase

Variant report

Variant rs62368577
Chromosome Location chr5:43696335-43696336
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:94 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:43659400-43696800 Weak transcription Gastric stomach
2 chr5:43659600-43706200 Weak transcription Small Intestine intestine
3 chr5:43659600-43710000 Weak transcription Ovary ovary
4 chr5:43661000-43702800 Weak transcription Primary T helper naive cells from peripheral blood blood
5 chr5:43661000-43711400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
6 chr5:43664800-43699800 Weak transcription Colon Smooth Muscle Colon
7 chr5:43665200-43702400 Weak transcription Fetal Heart heart
8 chr5:43666800-43696600 Weak transcription Spleen Spleen
9 chr5:43667000-43696800 Weak transcription Lung lung
10 chr5:43667000-43703200 Weak transcription Colonic Mucosa Colon
11 chr5:43673400-43696400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
12 chr5:43674600-43696400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
13 chr5:43674600-43699600 Weak transcription Pancreas Pancrea
14 chr5:43675200-43711400 Weak transcription NH-A brain
15 chr5:43676400-43703200 Weak transcription Osteobl bone
16 chr5:43676600-43701200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
17 chr5:43679000-43703600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
18 chr5:43679200-43702800 Weak transcription HUVEC blood vessel
19 chr5:43680800-43702400 Weak transcription Hela-S3 cervix
20 chr5:43680800-43715400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
21 chr5:43681000-43696600 Weak transcription Sigmoid Colon Sigmoid Colon
22 chr5:43681000-43703000 Weak transcription HSMM muscle
23 chr5:43683600-43696600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
24 chr5:43684000-43701200 Weak transcription HSMMtube muscle
25 chr5:43684200-43696600 Weak transcription Breast Myoepithelial Primary Cells Breast
26 chr5:43684200-43699200 Weak transcription Skeletal Muscle Female skeletal muscle
27 chr5:43684200-43702800 Weak transcription Duodenum Smooth Muscle Duodenum
28 chr5:43684200-43715400 Weak transcription Stomach Smooth Muscle stomach
29 chr5:43684600-43697800 Weak transcription Psoas Muscle Psoas
30 chr5:43684800-43714600 Weak transcription Aorta Aorta
31 chr5:43685800-43705800 Weak transcription Rectal Smooth Muscle rectum
32 chr5:43686000-43696600 Weak transcription Brain Cingulate Gyrus brain
33 chr5:43686000-43702200 Weak transcription Brain Hippocampus Middle brain
34 chr5:43686000-43703000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
35 chr5:43686000-43703000 Weak transcription Brain Anterior Caudate brain
36 chr5:43686200-43711400 Weak transcription Muscle Satellite Cultured Cells --
37 chr5:43686400-43701000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
38 chr5:43687200-43696400 Weak transcription Brain Inferior Temporal Lobe brain
39 chr5:43688000-43702800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
40 chr5:43688400-43702800 Weak transcription NHDF-Ad bronchial
41 chr5:43693400-43696400 Weak transcription Fetal Brain Female brain
42 chr5:43693400-43696600 Weak transcription Fetal Adrenal Gland Adrenal Gland
43 chr5:43693800-43699600 Weak transcription Fetal Lung lung
44 chr5:43694000-43697000 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
45 chr5:43694000-43697400 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
46 chr5:43694200-43697000 ZNF genes & repeats Primary B cells from cord blood blood
47 chr5:43694200-43697200 Strong transcription Primary T helper naive cells fromperipheralblood blood
48 chr5:43694200-43697200 ZNF genes & repeats Primary T regulatory cells fromperipheralblood blood
49 chr5:43694200-43697600 ZNF genes & repeats Primary hematopoietic stem cells blood
50 chr5:43694400-43697200 ZNF genes & repeats Primary hematopoietic stem cells short term culture blood

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Last update: Aug 31, 2015