Variant report

Variant	rs62368591
Chromosome Location	chr5:43721068-43721069
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 139 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:135)

rs_ID	r²[population]
rs10461741	1.00[AFR][1000 genomes]
rs10461742	1.00[AFR][1000 genomes]
rs10461743	1.00[AFR][1000 genomes]
rs10461747	1.00[AFR][1000 genomes]
rs10462052	1.00[AFR][1000 genomes]
rs10462053	1.00[AFR][1000 genomes]
rs10462054	1.00[AFR][1000 genomes]
rs10462055	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs10462056	1.00[AFR][1000 genomes]
rs10462057	1.00[AFR][1000 genomes]
rs12654258	1.00[AFR][1000 genomes]
rs13158796	1.00[AFR][1000 genomes]
rs13159393	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs13161298	1.00[AFR][1000 genomes]
rs13163981	1.00[AFR][1000 genomes]
rs13166593	1.00[AFR][1000 genomes]
rs13169851	1.00[AFR][1000 genomes]
rs13170672	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs13173498	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs13173726	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs13174983	1.00[AFR][1000 genomes]
rs13175037	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs13175688	1.00[AFR][1000 genomes]
rs13177107	1.00[AFR][1000 genomes]
rs13178040	1.00[AFR][1000 genomes]
rs13178059	1.00[AFR][1000 genomes]
rs13179099	1.00[AFR][1000 genomes]
rs13181483	1.00[AFR][1000 genomes]
rs13183122	1.00[AFR][1000 genomes]
rs13183124	1.00[AFR][1000 genomes]
rs13184712	1.00[AFR][1000 genomes]
rs13187073	1.00[AFR][1000 genomes]
rs13187313	1.00[AFR][1000 genomes]
rs13188640	1.00[AFR][1000 genomes]
rs13188683	1.00[AFR][1000 genomes]
rs13189630	1.00[AFR][1000 genomes]
rs1469436	1.00[AFR][1000 genomes]
rs16873404	1.00[AFR][1000 genomes]
rs16873421	1.00[AFR][1000 genomes]
rs16873443	1.00[AFR][1000 genomes]
rs16873454	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs16873455	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs16873466	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs16873471	1.00[AFR][1000 genomes]
rs16873502	1.00[AFR][1000 genomes]
rs2042950	1.00[AFR][1000 genomes]
rs34003086	1.00[AFR][1000 genomes]
rs34028586	1.00[AFR][1000 genomes]
rs34076603	1.00[AFR][1000 genomes]
rs34079397	0.86[EUR][1000 genomes]
rs34289650	1.00[AFR][1000 genomes]
rs34307136	1.00[AFR][1000 genomes]
rs34308364	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs34361701	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs34369923	1.00[AFR][1000 genomes]
rs34420640	1.00[AFR][1000 genomes]
rs34435369	1.00[AFR][1000 genomes]
rs34572440	1.00[AFR][1000 genomes]
rs34577568	1.00[AFR][1000 genomes]
rs34753533	1.00[AFR][1000 genomes]
rs34760245	1.00[AFR][1000 genomes]
rs34784550	1.00[AFR][1000 genomes]
rs34814715	1.00[AFR][1000 genomes]
rs34844158	1.00[AFR][1000 genomes]
rs34897533	1.00[AFR][1000 genomes]
rs34985223	1.00[AFR][1000 genomes]
rs35023717	1.00[AFR][1000 genomes]
rs35047682	1.00[AFR][1000 genomes]
rs35141665	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs35201656	1.00[AFR][1000 genomes]
rs35249562	1.00[AFR][1000 genomes]
rs35370110	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs35393262	1.00[AFR][1000 genomes]
rs35429460	1.00[AFR][1000 genomes]
rs35493041	1.00[AFR][1000 genomes]
rs35609488	1.00[AFR][1000 genomes]
rs35679811	1.00[AFR][1000 genomes]
rs35738789	0.80[EUR][1000 genomes]
rs35768478	1.00[AFR][1000 genomes]
rs35773128	1.00[AFR][1000 genomes]
rs35818459	1.00[AFR][1000 genomes]
rs35826690	1.00[AFR][1000 genomes]
rs35890297	1.00[AFR][1000 genomes]
rs35910245	1.00[AFR][1000 genomes]
rs35979310	1.00[AFR][1000 genomes]
rs36021958	1.00[AFR][1000 genomes]
rs3764979	1.00[AFR][1000 genomes]
rs3764980	1.00[AFR][1000 genomes]
rs3792915	1.00[AFR][1000 genomes]
rs3792917	1.00[AFR][1000 genomes]
rs3792921	1.00[AFR][1000 genomes]
rs3792922	1.00[AFR][1000 genomes]
rs3805720	1.00[AFR][1000 genomes]
rs3805721	1.00[AFR][1000 genomes]
rs3805723	1.00[AFR][1000 genomes]
rs3828695	1.00[AFR][1000 genomes]
rs41271083	1.00[AFR][1000 genomes]
rs4382179	1.00[AFR][1000 genomes]
rs62367605	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62367607	1.00[AFR][1000 genomes]
rs62367633	1.00[AFR][1000 genomes]
rs62367649	1.00[AFR][1000 genomes]
rs62367651	1.00[AFR][1000 genomes]
rs62367653	0.86[EUR][1000 genomes]
rs62367658	1.00[AFR][1000 genomes]
rs62368072	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62368561	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs62368564	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs62368565	1.00[AFR][1000 genomes]
rs62368567	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs62368568	1.00[AFR][1000 genomes]
rs62368569	1.00[AFR][1000 genomes]
rs62368570	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62368571	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs62368574	1.00[AFR][1000 genomes]
rs62368575	1.00[AFR][1000 genomes]
rs62368577	1.00[AFR][1000 genomes]
rs62368581	1.00[AFR][1000 genomes]
rs62368584	1.00[AFR][1000 genomes]
rs62368597	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62368636	1.00[AFR][1000 genomes]
rs62368637	1.00[AFR][1000 genomes]
rs62368641	1.00[AFR][1000 genomes]
rs62368656	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs62369476	1.00[AFR][1000 genomes]
rs62369480	1.00[AFR][1000 genomes]
rs62369481	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs71590644	1.00[AFR][1000 genomes]
rs71590645	1.00[AFR][1000 genomes]
rs71629182	1.00[AFR][1000 genomes]
rs71629184	1.00[AFR][1000 genomes]
rs71629187	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs71629189	1.00[AFR][1000 genomes]
rs71629193	1.00[AFR][1000 genomes]
rs716960	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881017	chr5:43444826-43731692	Weak transcription Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	222 gene(s)	inside rSNPs	diseases
2	nsv881108	chr5:43527432-43800333	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	esv3471542	chr5:43665651-43824536	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	esv3471543	chr5:43665767-43824443	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43706000-43725000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links