Variant report

Variant	rs16873471
Chromosome Location	chr5:43684918-43684919
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 274 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:270)

rs_ID	r²[population]
rs10039531	0.83[ASN][1000 genomes]
rs10042852	0.95[ASN][1000 genomes]
rs10045029	0.83[ASN][1000 genomes]
rs10050726	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10054514	0.96[ASN][1000 genomes]
rs10055374	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10058080	1.00[CEU][hapmap]
rs10058555	0.97[EUR][1000 genomes]
rs10059603	0.84[ASN][1000 genomes]
rs10059613	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10062920	0.90[ASN][1000 genomes]
rs10064711	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10065107	0.83[ASN][1000 genomes]
rs10066806	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10068765	0.98[ASN][1000 genomes]
rs10069201	0.81[CHB][hapmap];0.80[ASN][1000 genomes]
rs10069341	0.93[ASN][1000 genomes]
rs10071683	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10073552	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10077102	0.96[ASN][1000 genomes]
rs10077972	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10079935	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10155531	0.93[ASN][1000 genomes]
rs10461741	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10461742	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10461743	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10461745	0.84[ASN][1000 genomes]
rs10461747	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10461748	0.90[ASN][1000 genomes]
rs10462052	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10462053	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10462054	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10462055	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10462056	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10462057	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10472386	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10472388	0.90[ASN][1000 genomes]
rs10941642	0.83[MKK][hapmap]
rs11737988	0.94[ASN][1000 genomes]
rs12332274	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12654258	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12655350	1.00[AMR][1000 genomes]
rs12659627	1.00[MEX][hapmap];0.83[MKK][hapmap]
rs12697461	0.83[ASN][1000 genomes]
rs12697462	0.83[ASN][1000 genomes]
rs13158796	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13159393	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13161149	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13161165	0.83[ASN][1000 genomes]
rs13161298	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13163981	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13165656	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13166593	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13169851	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13170672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13173365	0.86[ASN][1000 genomes]
rs13173498	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13173726	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13174983	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs13175037	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13175688	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13177107	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13177579	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13178040	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13178059	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13179099	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13181483	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13182721	0.90[ASN][1000 genomes]
rs13183122	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13183124	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13183238	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13184712	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13186372	1.00[AMR][1000 genomes]
rs13187073	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13187313	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13187446	0.90[ASN][1000 genomes]
rs13187695	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13188640	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13188683	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13189630	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13357293	0.83[ASN][1000 genomes]
rs13361045	0.90[ASN][1000 genomes]
rs1469436	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16873404	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs16873421	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs16873433	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16873443	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16873454	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16873455	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16873466	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16873502	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.88[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2042950	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2303732	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2303733	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28520030	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34003086	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34028586	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34076603	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34079397	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34132518	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34153332	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34184759	0.90[ASN][1000 genomes]
rs34225966	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34289650	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34307136	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34308364	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34315545	0.83[ASN][1000 genomes]
rs34325384	0.93[ASN][1000 genomes]
rs34330393	1.00[AMR][1000 genomes]
rs34361701	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34361740	0.99[ASN][1000 genomes]
rs34369923	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34378343	0.83[ASN][1000 genomes]
rs34420640	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34435369	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34571724	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34572440	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34577568	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34748969	0.83[ASN][1000 genomes]
rs34753533	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34760245	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34784550	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34814715	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34844158	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34897533	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34902970	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34985223	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35023467	0.88[ASN][1000 genomes]
rs35023717	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35047682	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35069805	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35072002	0.93[ASN][1000 genomes]
rs35141665	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35151191	0.90[ASN][1000 genomes]
rs35201656	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35228179	0.83[ASN][1000 genomes]
rs35249562	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35370110	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35383935	0.93[ASN][1000 genomes]
rs35388758	0.89[ASN][1000 genomes]
rs35393262	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35429460	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35442919	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35493041	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35592802	0.83[ASN][1000 genomes]
rs35606071	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35609488	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35663171	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35672591	0.90[ASN][1000 genomes]
rs35679811	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35687864	0.83[ASN][1000 genomes]
rs35696038	0.85[ASN][1000 genomes]
rs35697559	0.89[ASN][1000 genomes]
rs35738789	1.00[AMR][1000 genomes]
rs35768478	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35773128	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35773835	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35818459	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35826690	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35842681	0.90[ASN][1000 genomes]
rs35867146	0.93[ASN][1000 genomes]
rs35890297	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs35910245	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35955731	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35979310	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs36021958	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3764979	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3764980	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3792915	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3792916	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3792917	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3792921	1.00[CEU][hapmap];1.00[GIH][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3792922	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3805720	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3805721	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3805723	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3828695	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3828696	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3884574	0.83[ASN][1000 genomes]
rs3884575	0.83[ASN][1000 genomes]
rs41271083	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4318792	0.83[ASN][1000 genomes]
rs4380668	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4382179	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4403180	0.90[ASN][1000 genomes]
rs4449542	0.83[ASN][1000 genomes]
rs4476731	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4484444	0.83[ASN][1000 genomes]
rs4493678	0.90[ASN][1000 genomes]
rs62367605	1.00[AFR][1000 genomes]
rs62367607	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs62367633	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62367649	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62367651	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62367653	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62367658	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62368072	1.00[AFR][1000 genomes]
rs62368561	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62368564	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62368565	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs62368567	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62368568	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs62368569	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs62368570	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62368571	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62368574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62368575	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62368577	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62368578	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62368581	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62368584	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62368591	1.00[AFR][1000 genomes]
rs62368597	1.00[AFR][1000 genomes]
rs62368632	0.90[ASN][1000 genomes]
rs62368636	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62368637	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62368638	0.84[ASN][1000 genomes]
rs62368640	0.88[ASN][1000 genomes]
rs62368641	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62368655	0.90[ASN][1000 genomes]
rs62368656	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62369476	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62369480	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62369481	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6451719	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap]
rs6451722	0.81[ASN][1000 genomes]
rs6862487	1.00[CEU][hapmap]
rs6863699	0.99[ASN][1000 genomes]
rs6868008	0.81[ASN][1000 genomes]
rs6868763	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6869748	0.85[ASN][1000 genomes]
rs6871373	0.88[JPT][hapmap]
rs6872959	0.93[ASN][1000 genomes]
rs6874033	0.90[ASN][1000 genomes]
rs6875118	0.95[ASN][1000 genomes]
rs6875365	0.83[ASN][1000 genomes]
rs6875400	0.83[ASN][1000 genomes]
rs6878821	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6892300	0.90[ASN][1000 genomes]
rs6895383	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6897045	0.85[ASN][1000 genomes]
rs6897559	0.83[ASN][1000 genomes]
rs71590644	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs71590645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs71629182	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs71629184	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs71629187	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71629189	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71629192	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs71629193	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs716960	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73753626	0.86[ASN][1000 genomes]
rs73753650	0.83[ASN][1000 genomes]
rs73753651	0.83[ASN][1000 genomes]
rs73753652	0.83[ASN][1000 genomes]
rs7708386	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7711370	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7713661	0.84[ASN][1000 genomes]
rs7713856	0.83[ASN][1000 genomes]
rs7716562	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7717645	0.84[ASN][1000 genomes]
rs7721405	0.83[ASN][1000 genomes]
rs7723874	0.85[ASN][1000 genomes]
rs7724195	0.83[ASN][1000 genomes]
rs7725789	0.90[ASN][1000 genomes]
rs7733259	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9292896	0.83[ASN][1000 genomes]
rs9686857	0.87[EUR][1000 genomes]
rs9784611	0.85[ASN][1000 genomes]
rs9918185	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881017	chr5:43444826-43731692	Weak transcription Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	222 gene(s)	inside rSNPs	diseases
2	nsv881108	chr5:43527432-43800333	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	esv3471542	chr5:43665651-43824536	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	esv3471543	chr5:43665767-43824443	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs16873471	NNT	cis	multi-tissue	Pritchard
rs16873471	NNT	cis	lymphoblastoid	seeQTL

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43650200-43685400	Weak transcription	Brain Cingulate Gyrus	brain
2	chr5:43657600-43695200	Weak transcription	K562	blood
3	chr5:43659400-43696800	Weak transcription	Gastric	stomach
4	chr5:43659600-43706200	Weak transcription	Small Intestine	intestine
5	chr5:43659600-43710000	Weak transcription	Ovary	ovary
6	chr5:43660000-43685600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr5:43661000-43695600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr5:43661000-43702800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr5:43661000-43711400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr5:43664800-43699800	Weak transcription	Colon Smooth Muscle	Colon
11	chr5:43665200-43688600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr5:43665200-43690400	Weak transcription	Fetal Lung	lung
13	chr5:43665200-43702400	Weak transcription	Fetal Heart	heart
14	chr5:43666800-43696600	Weak transcription	Spleen	Spleen
15	chr5:43667000-43695000	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr5:43667000-43695600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr5:43667000-43696800	Weak transcription	Lung	lung
18	chr5:43667000-43703200	Weak transcription	Colonic Mucosa	Colon
19	chr5:43667200-43695400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr5:43667400-43685000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr5:43671000-43685000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr5:43672400-43695800	Weak transcription	Esophagus	oesophagus
23	chr5:43673400-43695400	Weak transcription	Fetal Stomach	stomach
24	chr5:43673400-43696400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr5:43673600-43687800	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr5:43674200-43686000	Strong transcription	Dnd41	blood
27	chr5:43674600-43696400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr5:43674600-43699600	Weak transcription	Pancreas	Pancrea
29	chr5:43675200-43711400	Weak transcription	NH-A	brain
30	chr5:43675400-43687800	Strong transcription	Primary monocytes fromperipheralblood	blood
31	chr5:43675800-43685200	Strong transcription	Liver	Liver
32	chr5:43676400-43685200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
33	chr5:43676400-43687400	Weak transcription	NHEK	skin
34	chr5:43676400-43695400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr5:43676400-43703200	Weak transcription	Osteobl	bone
36	chr5:43676600-43695400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr5:43676600-43701200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr5:43676800-43685600	Weak transcription	GM12878-XiMat	blood
39	chr5:43676800-43685600	Weak transcription	NHLF	lung
40	chr5:43678400-43685400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr5:43679000-43703600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr5:43679200-43702800	Weak transcription	HUVEC	blood vessel
43	chr5:43679600-43694200	Weak transcription	Primary hematopoietic stem cells	blood
44	chr5:43679600-43695200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr5:43680200-43685400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr5:43680600-43688400	Strong transcription	Primary B cells from cord blood	blood
47	chr5:43680800-43686800	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr5:43680800-43702400	Weak transcription	Hela-S3	cervix
49	chr5:43680800-43715400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr5:43681000-43685600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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