Variant report

Variant	rs62368072
Chromosome Location	chr5:43853398-43853399
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10461747	1.00[AFR][1000 genomes]
rs10462055	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs10462056	1.00[AFR][1000 genomes]
rs10462057	1.00[AFR][1000 genomes]
rs13159393	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs13163981	1.00[AFR][1000 genomes]
rs13170672	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs13173498	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs13173726	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs13174983	1.00[AFR][1000 genomes]
rs13175037	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs13178040	1.00[AFR][1000 genomes]
rs13178059	1.00[AFR][1000 genomes]
rs13179099	1.00[AFR][1000 genomes]
rs13183122	1.00[AFR][1000 genomes]
rs13183124	1.00[AFR][1000 genomes]
rs13184712	1.00[AFR][1000 genomes]
rs16873454	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs16873455	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs16873466	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs16873471	1.00[AFR][1000 genomes]
rs16873502	1.00[AFR][1000 genomes]
rs34003086	1.00[AFR][1000 genomes]
rs34028586	1.00[AFR][1000 genomes]
rs34079397	0.86[EUR][1000 genomes]
rs34289650	1.00[AFR][1000 genomes]
rs34308364	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs34361701	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs34420640	1.00[AFR][1000 genomes]
rs34435369	1.00[AFR][1000 genomes]
rs34814715	1.00[AFR][1000 genomes]
rs34844158	1.00[AFR][1000 genomes]
rs34897533	1.00[AFR][1000 genomes]
rs35047682	1.00[AFR][1000 genomes]
rs35141665	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs35249562	1.00[AFR][1000 genomes]
rs35370110	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs35429460	1.00[AFR][1000 genomes]
rs35609488	1.00[AFR][1000 genomes]
rs35773128	1.00[AFR][1000 genomes]
rs35818459	1.00[AFR][1000 genomes]
rs4382179	1.00[AFR][1000 genomes]
rs62367651	1.00[AFR][1000 genomes]
rs62367653	0.86[EUR][1000 genomes]
rs62367658	1.00[AFR][1000 genomes]
rs62368561	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs62368564	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs62368565	1.00[AFR][1000 genomes]
rs62368567	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs62368568	1.00[AFR][1000 genomes]
rs62368569	1.00[AFR][1000 genomes]
rs62368570	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62368571	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs62368574	1.00[AFR][1000 genomes]
rs62368575	1.00[AFR][1000 genomes]
rs62368577	1.00[AFR][1000 genomes]
rs62368581	1.00[AFR][1000 genomes]
rs62368584	1.00[AFR][1000 genomes]
rs62368591	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62368597	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62368636	1.00[AFR][1000 genomes]
rs62368637	1.00[AFR][1000 genomes]
rs62368641	1.00[AFR][1000 genomes]
rs62368656	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs62369476	1.00[AFR][1000 genomes]
rs62369480	1.00[AFR][1000 genomes]
rs62369481	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs71629187	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs71629189	1.00[AFR][1000 genomes]
rs71629193	1.00[AFR][1000 genomes]
rs716960	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830374	chr5:43785548-44341631	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43849000-43853400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr5:43852000-43856200	Enhancers	Fetal Lung	lung
3	chr5:43852200-43853400	Weak transcription	Right Atrium	heart
4	chr5:43852600-43853600	Weak transcription	Fetal Heart	heart

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