The 2.0 version of rSNPBase

Variant report

Variant rs34420640
Chromosome Location chr5:43698243-43698244
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:95 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:43659600-43706200 Weak transcription Small Intestine intestine
2 chr5:43659600-43710000 Weak transcription Ovary ovary
3 chr5:43661000-43702800 Weak transcription Primary T helper naive cells from peripheral blood blood
4 chr5:43661000-43711400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
5 chr5:43664800-43699800 Weak transcription Colon Smooth Muscle Colon
6 chr5:43665200-43702400 Weak transcription Fetal Heart heart
7 chr5:43667000-43703200 Weak transcription Colonic Mucosa Colon
8 chr5:43674600-43699600 Weak transcription Pancreas Pancrea
9 chr5:43675200-43711400 Weak transcription NH-A brain
10 chr5:43676400-43703200 Weak transcription Osteobl bone
11 chr5:43676600-43701200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
12 chr5:43679000-43703600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
13 chr5:43679200-43702800 Weak transcription HUVEC blood vessel
14 chr5:43680800-43702400 Weak transcription Hela-S3 cervix
15 chr5:43680800-43715400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
16 chr5:43681000-43703000 Weak transcription HSMM muscle
17 chr5:43684000-43701200 Weak transcription HSMMtube muscle
18 chr5:43684200-43699200 Weak transcription Skeletal Muscle Female skeletal muscle
19 chr5:43684200-43702800 Weak transcription Duodenum Smooth Muscle Duodenum
20 chr5:43684200-43715400 Weak transcription Stomach Smooth Muscle stomach
21 chr5:43684800-43714600 Weak transcription Aorta Aorta
22 chr5:43685800-43705800 Weak transcription Rectal Smooth Muscle rectum
23 chr5:43686000-43702200 Weak transcription Brain Hippocampus Middle brain
24 chr5:43686000-43703000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
25 chr5:43686000-43703000 Weak transcription Brain Anterior Caudate brain
26 chr5:43686200-43711400 Weak transcription Muscle Satellite Cultured Cells --
27 chr5:43686400-43701000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
28 chr5:43688000-43702800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
29 chr5:43688400-43702800 Weak transcription NHDF-Ad bronchial
30 chr5:43693800-43699600 Weak transcription Fetal Lung lung
31 chr5:43694400-43702400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
32 chr5:43695800-43702800 Weak transcription Primary T killer naive cells fromperipheralblood blood
33 chr5:43695800-43707000 Weak transcription K562 blood
34 chr5:43695800-43711400 Weak transcription Right Ventricle heart
35 chr5:43696000-43700000 Weak transcription Primary T helper cells PMA-I stimulated --
36 chr5:43696000-43700000 Weak transcription Primary T killer memory cells from peripheral blood blood
37 chr5:43696000-43700800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
38 chr5:43696000-43702800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
39 chr5:43696000-43703200 Weak transcription Pancreatic Islets Pancreatic Islet
40 chr5:43696000-43707200 Weak transcription Rectal Mucosa Donor 29 rectum
41 chr5:43696200-43702800 Weak transcription Fetal Muscle Trunk muscle
42 chr5:43696800-43699400 Weak transcription Liver Liver
43 chr5:43696800-43700000 Weak transcription Primary T cells fromperipheralblood blood
44 chr5:43696800-43702400 Weak transcription Primary neutrophils fromperipheralblood blood
45 chr5:43696800-43711600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
46 chr5:43697000-43699200 Weak transcription Left Ventricle heart
47 chr5:43697000-43700000 Weak transcription Monocytes-CD14+_RO01746 blood
48 chr5:43697000-43700200 Weak transcription Primary monocytes fromperipheralblood blood
49 chr5:43697000-43700200 Weak transcription Adipose Nuclei Adipose
50 chr5:43697000-43700200 Weak transcription Sigmoid Colon Sigmoid Colon

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Last update: Aug 31, 2015