The 2.0 version of rSNPBase

Variant report

Variant rs3828696
Chromosome Location chr5:43704072-43704073
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:96 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:43659600-43706200 Weak transcription Small Intestine intestine
2 chr5:43659600-43710000 Weak transcription Ovary ovary
3 chr5:43661000-43711400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
4 chr5:43675200-43711400 Weak transcription NH-A brain
5 chr5:43680800-43715400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
6 chr5:43684200-43715400 Weak transcription Stomach Smooth Muscle stomach
7 chr5:43684800-43714600 Weak transcription Aorta Aorta
8 chr5:43685800-43705800 Weak transcription Rectal Smooth Muscle rectum
9 chr5:43686200-43711400 Weak transcription Muscle Satellite Cultured Cells --
10 chr5:43695800-43707000 Weak transcription K562 blood
11 chr5:43695800-43711400 Weak transcription Right Ventricle heart
12 chr5:43696000-43707200 Weak transcription Rectal Mucosa Donor 29 rectum
13 chr5:43696800-43711600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
14 chr5:43697000-43704200 Weak transcription Gastric stomach
15 chr5:43697000-43704200 Weak transcription Lung lung
16 chr5:43697000-43704400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
17 chr5:43697000-43705800 Weak transcription Fetal Brain Female brain
18 chr5:43697000-43705800 Weak transcription Spleen Spleen
19 chr5:43697000-43706000 Strong transcription Primary B cells from peripheral blood blood
20 chr5:43697000-43706000 Weak transcription Fetal Stomach stomach
21 chr5:43697000-43706200 Weak transcription Brain Substantia Nigra brain
22 chr5:43697000-43706200 Weak transcription Esophagus oesophagus
23 chr5:43697000-43710800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
24 chr5:43697000-43711400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
25 chr5:43697000-43715000 Weak transcription Brain Cingulate Gyrus brain
26 chr5:43697200-43711400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
27 chr5:43697400-43704200 Weak transcription Brain Germinal Matrix brain
28 chr5:43697600-43704200 Weak transcription Primary hematopoietic stem cells blood
29 chr5:43698600-43707400 Weak transcription Thymus Thymus
30 chr5:43699200-43706000 Strong transcription Primary T helper cells fromperipheralblood blood
31 chr5:43699400-43706000 Strong transcription Primary T cells from cord blood blood
32 chr5:43699800-43705800 Strong transcription Dnd41 blood
33 chr5:43700000-43705200 Strong transcription Primary T regulatory cells fromperipheralblood blood
34 chr5:43700000-43705600 Strong transcription Primary T cells fromperipheralblood blood
35 chr5:43700000-43706200 Strong transcription Primary T helper cells PMA-I stimulated --
36 chr5:43700000-43706200 Strong transcription Monocytes-CD14+_RO01746 blood
37 chr5:43700200-43705800 Strong transcription Primary monocytes fromperipheralblood blood
38 chr5:43700200-43706200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
39 chr5:43700200-43706400 Strong transcription Primary Natural Killer cells fromperipheralblood blood
40 chr5:43700400-43705400 Weak transcription Skeletal Muscle Male skeletal muscle
41 chr5:43700400-43709200 Weak transcription Pancreas Pancrea
42 chr5:43700600-43711400 Weak transcription HUES6 Cell Line embryonic stem cell
43 chr5:43700800-43706800 Strong transcription Primary hematopoietic stem cells short term culture blood
44 chr5:43701000-43704400 Weak transcription Fetal Lung lung
45 chr5:43701000-43705600 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
46 chr5:43701200-43704800 Strong transcription Fetal Thymus thymus
47 chr5:43701400-43705800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
48 chr5:43701400-43706000 Strong transcription Primary T helper naive cells fromperipheralblood blood
49 chr5:43701600-43704200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
50 chr5:43701600-43706000 Weak transcription GM12878-XiMat blood

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Last update: Aug 31, 2015