Variant report

Variant	rs6872531
Chromosome Location	chr5:43732239-43732240
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10050726	0.83[ASN][1000 genomes]
rs10054514	0.80[ASN][1000 genomes]
rs10055374	0.80[ASN][1000 genomes]
rs10062920	0.81[ASN][1000 genomes]
rs10069201	0.88[CHB][hapmap];0.93[CHD][hapmap];0.85[GIH][hapmap];0.81[JPT][hapmap];0.94[ASN][1000 genomes]
rs10069341	0.83[ASN][1000 genomes]
rs10073552	0.80[ASN][1000 genomes]
rs10077102	0.80[ASN][1000 genomes]
rs10155531	0.83[ASN][1000 genomes]
rs10461747	0.81[ASN][1000 genomes]
rs10461748	0.81[ASN][1000 genomes]
rs10462056	0.81[ASN][1000 genomes]
rs10462057	0.81[ASN][1000 genomes]
rs10472386	0.80[ASN][1000 genomes]
rs10472388	0.81[ASN][1000 genomes]
rs11737988	0.82[ASN][1000 genomes]
rs13165656	0.80[ASN][1000 genomes]
rs13178040	0.81[ASN][1000 genomes]
rs13182721	0.81[ASN][1000 genomes]
rs13184712	0.81[ASN][1000 genomes]
rs13187446	0.81[ASN][1000 genomes]
rs13187695	0.80[ASN][1000 genomes]
rs13361045	0.81[ASN][1000 genomes]
rs16873502	0.81[CHB][hapmap];0.80[ASN][1000 genomes]
rs2303732	0.80[ASN][1000 genomes]
rs28520030	0.80[ASN][1000 genomes]
rs34028586	0.81[ASN][1000 genomes]
rs34184759	0.81[ASN][1000 genomes]
rs34325384	0.83[ASN][1000 genomes]
rs34814715	0.80[ASN][1000 genomes]
rs34844158	0.80[ASN][1000 genomes]
rs35047682	0.81[ASN][1000 genomes]
rs35072002	0.83[ASN][1000 genomes]
rs35151191	0.81[ASN][1000 genomes]
rs35249562	0.81[ASN][1000 genomes]
rs35383935	0.83[ASN][1000 genomes]
rs35388758	0.80[ASN][1000 genomes]
rs35442919	0.80[ASN][1000 genomes]
rs35672591	0.81[ASN][1000 genomes]
rs35697559	0.80[ASN][1000 genomes]
rs35842681	0.81[ASN][1000 genomes]
rs35867146	0.83[ASN][1000 genomes]
rs35955731	0.80[ASN][1000 genomes]
rs3828696	0.80[ASN][1000 genomes]
rs4380668	0.80[ASN][1000 genomes]
rs4382179	0.80[ASN][1000 genomes]
rs4403180	0.81[ASN][1000 genomes]
rs4476731	0.80[ASN][1000 genomes]
rs4493678	0.81[ASN][1000 genomes]
rs57983993	0.81[EUR][1000 genomes]
rs62368581	0.80[ASN][1000 genomes]
rs62368584	0.80[ASN][1000 genomes]
rs62368632	0.81[ASN][1000 genomes]
rs62368641	0.81[ASN][1000 genomes]
rs62368655	0.81[ASN][1000 genomes]
rs62369476	0.81[ASN][1000 genomes]
rs62369480	0.80[ASN][1000 genomes]
rs6451722	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6872959	0.83[ASN][1000 genomes]
rs6874033	0.81[ASN][1000 genomes]
rs6878821	0.80[ASN][1000 genomes]
rs6892300	0.81[ASN][1000 genomes]
rs6895383	0.80[ASN][1000 genomes]
rs71629192	0.80[ASN][1000 genomes]
rs716960	0.81[CHB][hapmap];0.80[ASN][1000 genomes]
rs7711370	0.83[ASN][1000 genomes]
rs7725789	0.81[ASN][1000 genomes]
rs7733259	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881108	chr5:43527432-43800333	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	esv3471542	chr5:43665651-43824536	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	esv3471543	chr5:43665767-43824443	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv537740	chr5:43729430-43782732	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6872531	NNT	cis	lymphoblastoid	seeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43731400-43732400	Weak transcription	Fetal Heart	heart

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