Variant report

Variant	rs34902970
Chromosome Location	chr5:43717075-43717076
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 267 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:263)

rs_ID	r²[population]
rs10035353	0.82[ASN][1000 genomes]
rs10039531	0.85[ASN][1000 genomes]
rs10042852	1.00[ASN][1000 genomes]
rs10045029	0.85[ASN][1000 genomes]
rs10050726	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10054514	0.99[ASN][1000 genomes]
rs10055374	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10058555	0.97[EUR][1000 genomes]
rs10059603	0.86[ASN][1000 genomes]
rs10059613	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10062920	0.93[ASN][1000 genomes]
rs10064711	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10065107	0.85[ASN][1000 genomes]
rs10066806	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10068765	0.95[ASN][1000 genomes]
rs10069201	0.85[ASN][1000 genomes]
rs10069341	0.95[ASN][1000 genomes]
rs10071683	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10073552	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10077102	0.99[ASN][1000 genomes]
rs10077972	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10079935	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10155531	0.95[ASN][1000 genomes]
rs10461741	1.00[AMR][1000 genomes]
rs10461742	1.00[AMR][1000 genomes]
rs10461743	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10461745	0.86[ASN][1000 genomes]
rs10461747	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10461748	0.93[ASN][1000 genomes]
rs10462052	1.00[AMR][1000 genomes]
rs10462053	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10462054	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10462055	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10462056	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10462057	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10472386	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10472388	0.93[ASN][1000 genomes]
rs11737988	0.96[ASN][1000 genomes]
rs12332274	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12654258	1.00[AMR][1000 genomes]
rs12655350	1.00[AMR][1000 genomes]
rs12697461	0.85[ASN][1000 genomes]
rs12697462	0.85[ASN][1000 genomes]
rs13158796	1.00[AMR][1000 genomes]
rs13159393	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13161149	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13161165	0.85[ASN][1000 genomes]
rs13161298	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13163981	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13165656	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13166593	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13169851	1.00[AMR][1000 genomes]
rs13170672	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13173365	0.89[ASN][1000 genomes]
rs13173498	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13173726	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13174983	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs13175037	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13175688	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13177107	1.00[AMR][1000 genomes]
rs13177579	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13178040	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13178059	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13179099	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13181483	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13182721	0.93[ASN][1000 genomes]
rs13183122	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13183124	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13183238	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13184712	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13186372	1.00[AMR][1000 genomes]
rs13187073	1.00[AMR][1000 genomes]
rs13187313	1.00[AMR][1000 genomes]
rs13187446	0.93[ASN][1000 genomes]
rs13187695	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13188640	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13188683	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13189630	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13357293	0.85[ASN][1000 genomes]
rs13361045	0.93[ASN][1000 genomes]
rs1469436	1.00[AMR][1000 genomes]
rs16873404	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs16873421	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs16873433	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16873443	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16873454	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16873455	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16873466	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16873471	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16873502	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2042950	1.00[AMR][1000 genomes]
rs2303732	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2303733	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28520030	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34003086	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34028586	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34076603	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34079397	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34132518	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34153332	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34184759	0.93[ASN][1000 genomes]
rs34225966	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34289650	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34307136	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34308364	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34315545	0.85[ASN][1000 genomes]
rs34325384	0.95[ASN][1000 genomes]
rs34330393	1.00[AMR][1000 genomes]
rs34361701	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34361740	0.96[ASN][1000 genomes]
rs34369923	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34378343	0.85[ASN][1000 genomes]
rs34420640	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34435369	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34571724	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34572440	1.00[AMR][1000 genomes]
rs34577568	1.00[AMR][1000 genomes]
rs34748969	0.85[ASN][1000 genomes]
rs34753533	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34760245	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34784550	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34814715	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34844158	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34871596	0.82[ASN][1000 genomes]
rs34897533	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34985223	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35023467	0.90[ASN][1000 genomes]
rs35023717	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35047682	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35069805	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35072002	0.95[ASN][1000 genomes]
rs35141665	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35151191	0.93[ASN][1000 genomes]
rs35201656	1.00[AMR][1000 genomes]
rs35228179	0.85[ASN][1000 genomes]
rs35249562	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35370110	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35383935	0.95[ASN][1000 genomes]
rs35388758	0.91[ASN][1000 genomes]
rs35393262	1.00[AMR][1000 genomes]
rs35429460	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35442919	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35493041	1.00[AMR][1000 genomes]
rs35580004	0.82[ASN][1000 genomes]
rs35592802	0.85[ASN][1000 genomes]
rs35606071	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35609488	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35663171	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35672591	0.93[ASN][1000 genomes]
rs35679811	1.00[AMR][1000 genomes]
rs35687864	0.85[ASN][1000 genomes]
rs35696038	0.88[ASN][1000 genomes]
rs35697559	0.91[ASN][1000 genomes]
rs35738789	1.00[AMR][1000 genomes]
rs35768478	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35773128	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35773835	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35818459	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35826690	1.00[AMR][1000 genomes]
rs35842681	0.93[ASN][1000 genomes]
rs35867146	0.95[ASN][1000 genomes]
rs35890297	0.85[AMR][1000 genomes]
rs35910245	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35955731	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35979310	1.00[AMR][1000 genomes]
rs36021958	1.00[AMR][1000 genomes]
rs3764979	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3764980	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3792915	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3792916	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3792917	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3792921	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3792922	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3805720	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3805721	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3805723	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3828695	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3828696	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3884574	0.85[ASN][1000 genomes]
rs3884575	0.85[ASN][1000 genomes]
rs41271083	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4318792	0.85[ASN][1000 genomes]
rs4380668	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4382179	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4403180	0.93[ASN][1000 genomes]
rs4449542	0.85[ASN][1000 genomes]
rs4476731	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4484444	0.85[ASN][1000 genomes]
rs4493678	0.93[ASN][1000 genomes]
rs62367607	1.00[AMR][1000 genomes]
rs62367633	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62367649	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62367651	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62367653	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62367658	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62368561	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62368564	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62368565	1.00[AMR][1000 genomes]
rs62368567	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62368568	1.00[AMR][1000 genomes]
rs62368569	1.00[AMR][1000 genomes]
rs62368570	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62368571	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62368574	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62368575	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62368577	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62368578	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62368581	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62368584	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62368632	0.93[ASN][1000 genomes]
rs62368636	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62368637	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62368638	0.86[ASN][1000 genomes]
rs62368640	0.90[ASN][1000 genomes]
rs62368641	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62368655	0.93[ASN][1000 genomes]
rs62368656	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62369476	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62369480	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62369481	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6451722	0.83[ASN][1000 genomes]
rs6863699	0.96[ASN][1000 genomes]
rs6868008	0.83[ASN][1000 genomes]
rs6868763	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6869748	0.88[ASN][1000 genomes]
rs6872959	0.95[ASN][1000 genomes]
rs6874033	0.93[ASN][1000 genomes]
rs6875118	0.93[ASN][1000 genomes]
rs6875365	0.85[ASN][1000 genomes]
rs6875400	0.85[ASN][1000 genomes]
rs6878821	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6892300	0.93[ASN][1000 genomes]
rs6895383	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6897045	0.88[ASN][1000 genomes]
rs6897559	0.85[ASN][1000 genomes]
rs71590644	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs71590645	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs71629182	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs71629184	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs71629187	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71629189	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71629192	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs71629193	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs716960	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73753626	0.89[ASN][1000 genomes]
rs73753650	0.85[ASN][1000 genomes]
rs73753651	0.85[ASN][1000 genomes]
rs73753652	0.85[ASN][1000 genomes]
rs7708386	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7711370	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7713661	0.87[ASN][1000 genomes]
rs7713856	0.85[ASN][1000 genomes]
rs7716562	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7717645	0.86[ASN][1000 genomes]
rs7721405	0.85[ASN][1000 genomes]
rs7723874	0.88[ASN][1000 genomes]
rs7724195	0.85[ASN][1000 genomes]
rs7725789	0.93[ASN][1000 genomes]
rs7733259	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9292896	0.85[ASN][1000 genomes]
rs9686857	0.87[EUR][1000 genomes]
rs9784611	0.88[ASN][1000 genomes]
rs9918185	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881017	chr5:43444826-43731692	Weak transcription Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	222 gene(s)	inside rSNPs	diseases
2	nsv881108	chr5:43527432-43800333	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	esv3471542	chr5:43665651-43824536	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	esv3471543	chr5:43665767-43824443	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43706000-43725000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr5:43716600-43717600	Weak transcription	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links