Variant report

Variant	rs62368594
Chromosome Location	chr5:43722419-43722420
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10039531	0.83[EUR][1000 genomes]
rs10042852	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10045029	0.83[EUR][1000 genomes]
rs10059603	0.83[EUR][1000 genomes]
rs10062920	0.83[EUR][1000 genomes]
rs10068765	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10069341	0.89[EUR][1000 genomes]
rs10074229	0.86[EUR][1000 genomes]
rs10077102	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10155531	0.86[EUR][1000 genomes]
rs10461744	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10461745	0.83[EUR][1000 genomes]
rs10461748	0.83[EUR][1000 genomes]
rs10472388	0.83[EUR][1000 genomes]
rs11737988	0.89[EUR][1000 genomes]
rs13161165	0.83[EUR][1000 genomes]
rs13161838	0.84[EUR][1000 genomes]
rs13173365	0.83[EUR][1000 genomes]
rs13182721	0.83[EUR][1000 genomes]
rs13187446	0.83[EUR][1000 genomes]
rs13356232	0.86[EUR][1000 genomes]
rs13357293	0.83[EUR][1000 genomes]
rs13361045	0.83[EUR][1000 genomes]
rs16873432	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16873435	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16873438	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34184759	0.83[EUR][1000 genomes]
rs34325384	0.89[EUR][1000 genomes]
rs34361740	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34748969	0.83[EUR][1000 genomes]
rs35023467	0.83[EUR][1000 genomes]
rs35072002	0.89[EUR][1000 genomes]
rs35151191	0.80[EUR][1000 genomes]
rs35228179	0.83[EUR][1000 genomes]
rs35383935	0.89[EUR][1000 genomes]
rs35388758	0.83[EUR][1000 genomes]
rs35592802	0.83[EUR][1000 genomes]
rs35672591	0.83[EUR][1000 genomes]
rs35687864	0.83[EUR][1000 genomes]
rs35697559	0.89[EUR][1000 genomes]
rs35842681	0.83[EUR][1000 genomes]
rs35867146	0.89[EUR][1000 genomes]
rs3792918	0.82[EUR][1000 genomes]
rs3805722	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3884574	0.83[EUR][1000 genomes]
rs3884575	0.83[EUR][1000 genomes]
rs4318792	0.83[EUR][1000 genomes]
rs4403180	0.83[EUR][1000 genomes]
rs4449542	0.83[EUR][1000 genomes]
rs4493678	0.83[EUR][1000 genomes]
rs62367650	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62368560	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62368566	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62368632	0.83[EUR][1000 genomes]
rs62368640	0.83[EUR][1000 genomes]
rs62368655	0.83[EUR][1000 genomes]
rs6451720	0.87[EUR][1000 genomes]
rs6863699	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6869748	0.83[EUR][1000 genomes]
rs6872959	0.89[EUR][1000 genomes]
rs6874033	0.83[EUR][1000 genomes]
rs6875118	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6892300	0.83[EUR][1000 genomes]
rs6893250	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6896932	0.86[EUR][1000 genomes]
rs6897559	0.83[EUR][1000 genomes]
rs6898436	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71629185	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7713458	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7713749	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7713856	0.82[EUR][1000 genomes]
rs7717974	0.80[EUR][1000 genomes]
rs7723874	0.83[EUR][1000 genomes]
rs7724195	0.83[EUR][1000 genomes]
rs7725789	0.81[EUR][1000 genomes]
rs7737947	0.82[EUR][1000 genomes]
rs9292896	0.83[EUR][1000 genomes]
rs9784611	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881017	chr5:43444826-43731692	Weak transcription Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	222 gene(s)	inside rSNPs	diseases
2	nsv881108	chr5:43527432-43800333	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	esv3471542	chr5:43665651-43824536	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	esv3471543	chr5:43665767-43824443	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43706000-43725000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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