The 2.0 version of rSNPBase

Variant report

Variant rs13161838
Chromosome Location chr5:43619961-43619962
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:119 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:43604200-43631200 Weak transcription A549 lung
2 chr5:43604400-43631200 Weak transcription Pancreas Pancrea
3 chr5:43604400-43635000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
4 chr5:43604400-43649200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
5 chr5:43604400-43649200 Weak transcription Esophagus oesophagus
6 chr5:43604400-43660600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
7 chr5:43604600-43624400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
8 chr5:43604600-43649800 Weak transcription Colonic Mucosa Colon
9 chr5:43604800-43630200 Weak transcription iPS-18 Cell Line embryonic stem cell
10 chr5:43604800-43630800 Weak transcription Rectal Smooth Muscle rectum
11 chr5:43604800-43635400 Weak transcription Gastric stomach
12 chr5:43604800-43635400 Weak transcription Spleen Spleen
13 chr5:43604800-43649800 Weak transcription iPS-20b Cell Line embryonic stem cell
14 chr5:43605000-43631200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
15 chr5:43605000-43631400 Weak transcription Lung lung
16 chr5:43605000-43656000 Weak transcription Small Intestine intestine
17 chr5:43605800-43625200 Strong transcription Primary hematopoietic stem cells short term culture blood
18 chr5:43606400-43633600 Strong transcription Primary monocytes fromperipheralblood blood
19 chr5:43606800-43648200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
20 chr5:43607800-43624200 Strong transcription Primary T cells from cord blood blood
21 chr5:43607800-43628200 Weak transcription Fetal Intestine Small intestine
22 chr5:43608200-43621400 Weak transcription H1 Cell Line embryonic stem cell
23 chr5:43608400-43624600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
24 chr5:43608400-43633600 Strong transcription Monocytes-CD14+_RO01746 blood
25 chr5:43608400-43640600 Strong transcription Dnd41 blood
26 chr5:43608600-43620200 Strong transcription Primary T helper cells PMA-I stimulated --
27 chr5:43608600-43620200 Strong transcription NHDF-Ad bronchial
28 chr5:43608600-43624200 Strong transcription Primary T helper cells fromperipheralblood blood
29 chr5:43608600-43624400 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
30 chr5:43608600-43624600 Strong transcription Primary T regulatory cells fromperipheralblood blood
31 chr5:43608600-43624600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
32 chr5:43608800-43620200 Strong transcription Primary T cells fromperipheralblood blood
33 chr5:43608800-43624800 Strong transcription Fetal Thymus thymus
34 chr5:43609200-43620200 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
35 chr5:43609200-43620200 Strong transcription Primary B cells from peripheral blood blood
36 chr5:43609200-43620200 Strong transcription GM12878-XiMat blood
37 chr5:43609200-43620400 Strong transcription Primary Natural Killer cells fromperipheralblood blood
38 chr5:43609400-43620000 Strong transcription Fetal Brain Female brain
39 chr5:43609400-43620200 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
40 chr5:43609400-43620200 Strong transcription Duodenum Smooth Muscle Duodenum
41 chr5:43609600-43620000 Strong transcription K562 blood
42 chr5:43609800-43620400 Strong transcription Fetal Intestine Large intestine
43 chr5:43610400-43620200 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
44 chr5:43610600-43627000 Weak transcription Right Ventricle heart
45 chr5:43610600-43632200 Weak transcription NHLF lung
46 chr5:43610800-43649400 Weak transcription Primary T killer naive cells fromperipheralblood blood
47 chr5:43611800-43620400 Strong transcription Cortex derived primary cultured neurospheres brain
48 chr5:43612400-43622600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
49 chr5:43612600-43622200 Weak transcription Brain Hippocampus Middle brain
50 chr5:43612600-43622600 Weak transcription Brain Angular Gyrus brain

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Last update: Aug 31, 2015