Variant report

Variant	rs1318453
Chromosome Location	chr3:43272584-43272585
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1034513	1.00[EUR][1000 genomes]
rs10514709	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12486205	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12631509	0.86[AMR][1000 genomes]
rs17075328	0.86[ASN][1000 genomes]
rs17075340	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17075375	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17075379	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17075391	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17075395	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17075409	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17075517	1.00[EUR][1000 genomes]
rs17075521	1.00[EUR][1000 genomes]
rs1878721	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2174636	0.84[AMR][1000 genomes]
rs2372360	0.82[ASN][1000 genomes]
rs2372367	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4580522	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6772070	0.80[AMR][1000 genomes]
rs6791526	0.97[ASN][1000 genomes]
rs6796424	0.97[ASN][1000 genomes]
rs6798292	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6800990	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72863603	0.80[AMR][1000 genomes]
rs73086702	0.97[ASN][1000 genomes]
rs73088703	0.97[ASN][1000 genomes]
rs7634209	0.97[ASN][1000 genomes]
rs7646966	0.82[ASN][1000 genomes]
rs7647227	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs938918	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834672	chr3:43132722-43306272	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43269600-43272600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:43271800-43273600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr3:43272200-43272800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr3:43272400-43273000	Enhancers	NHEK	skin
5	chr3:43272400-43273200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr3:43272400-43273200	Enhancers	NHDF-Ad	bronchial
7	chr3:43272400-43273400	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr3:43272400-43273600	Enhancers	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links