Variant report

Variant	rs10514709
Chromosome Location	chr3:43306344-43306345
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:43305979..43308043-chr3:43325669..43327950,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1034513	1.00[EUR][1000 genomes]
rs12486205	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12491025	0.80[AMR][1000 genomes]
rs12495798	0.80[AMR][1000 genomes]
rs12631509	0.88[AMR][1000 genomes]
rs1318453	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1320160	0.97[ASN][1000 genomes]
rs1320161	0.97[ASN][1000 genomes]
rs1320162	0.97[ASN][1000 genomes]
rs1320163	0.97[ASN][1000 genomes]
rs1506619	0.80[AMR][1000 genomes]
rs17075328	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs17075340	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17075375	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17075379	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17075391	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17075395	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17075409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17075517	1.00[EUR][1000 genomes]
rs17075521	1.00[EUR][1000 genomes]
rs1878721	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1996497	0.97[ASN][1000 genomes]
rs2174636	0.86[AMR][1000 genomes]
rs2372360	0.94[ASN][1000 genomes]
rs2372361	0.91[ASN][1000 genomes]
rs2372367	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4580522	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4682883	1.00[JPT][hapmap]
rs6772070	0.85[AMR][1000 genomes]
rs6791526	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs6796424	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs6798292	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6800990	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72863603	0.85[AMR][1000 genomes]
rs7634209	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs7646966	0.94[ASN][1000 genomes]
rs7647227	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs938918	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752008	chr3:43285369-43360879	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1009102	chr3:43285369-43369712	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43299800-43306400	Weak transcription	Spleen	Spleen
2	chr3:43299800-43308200	Weak transcription	Right Atrium	heart
3	chr3:43302000-43314000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr3:43302400-43310000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr3:43305400-43306600	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr3:43305800-43306400	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr3:43305800-43306400	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr3:43306000-43306600	Enhancers	Primary monocytes fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links