Variant report

Variant	rs17075391
Chromosome Location	chr3:43285445-43285446
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1034513	1.00[EUR][1000 genomes]
rs10514709	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12486205	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12631509	0.82[AMR][1000 genomes]
rs1318453	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1320160	0.82[ASN][1000 genomes]
rs1320161	0.82[ASN][1000 genomes]
rs1320162	0.82[ASN][1000 genomes]
rs1320163	0.82[ASN][1000 genomes]
rs17075328	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs17075340	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17075375	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17075379	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17075395	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17075409	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17075517	1.00[EUR][1000 genomes]
rs17075521	1.00[EUR][1000 genomes]
rs1878721	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1996497	0.82[ASN][1000 genomes]
rs2174636	0.81[AMR][1000 genomes]
rs2372360	0.85[ASN][1000 genomes]
rs2372367	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4580522	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4682883	1.00[JPT][hapmap];0.89[MEX][hapmap]
rs6772070	0.80[AMR][1000 genomes]
rs6791526	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6796424	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6798292	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6800990	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72863603	0.80[AMR][1000 genomes]
rs73086702	0.94[ASN][1000 genomes]
rs73088703	0.94[ASN][1000 genomes]
rs7634209	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7646966	0.85[ASN][1000 genomes]
rs7647227	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs938918	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834672	chr3:43132722-43306272	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2752008	chr3:43285369-43360879	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1009102	chr3:43285369-43369712	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43284200-43286400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
2	chr3:43284200-43289800	Enhancers	Primary T helper naive cells from peripheral blood	blood
3	chr3:43284400-43288400	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr3:43284400-43289800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr3:43284400-43290000	Enhancers	Primary T cells fromperipheralblood	blood
6	chr3:43284400-43290000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr3:43284400-43290400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr3:43284400-43300400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr3:43284600-43287400	Enhancers	Fetal Muscle Leg	muscle
10	chr3:43284600-43289400	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr3:43284600-43290000	Enhancers	Primary T cells from cord blood	blood
12	chr3:43284800-43289400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr3:43285000-43285600	Weak transcription	Adipose Nuclei	Adipose
14	chr3:43285000-43285800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr3:43285000-43286000	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr3:43285000-43286200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr3:43285000-43288000	Enhancers	HUVEC	blood vessel
18	chr3:43285000-43289600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr3:43285000-43289600	Enhancers	Primary T helper cells fromperipheralblood	blood
20	chr3:43285200-43285800	Enhancers	Lung	lung
21	chr3:43285200-43286400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr3:43285200-43286400	Enhancers	Spleen	Spleen
23	chr3:43285200-43286600	Enhancers	Primary hematopoietic stem cells	blood
24	chr3:43285200-43286800	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr3:43285200-43286800	Enhancers	Psoas Muscle	Psoas
26	chr3:43285200-43290000	Enhancers	Primary B cells from peripheral blood	blood
27	chr3:43285400-43285600	Enhancers	Primary B cells from cord blood	blood
28	chr3:43285400-43285800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
29	chr3:43285400-43286000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr3:43285400-43286000	Enhancers	Thymus	Thymus
31	chr3:43285400-43286200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
32	chr3:43285400-43290000	Weak transcription	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links