The 2.0 version of rSNPBase

Variant report

Variant rs13188750
Chromosome Location chr5:76001950-76001951
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:58 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:75948000-76004600 Strong transcription Primary Natural Killer cells fromperipheralblood blood
2 chr5:75977600-76003400 Strong transcription Primary T regulatory cells fromperipheralblood blood
3 chr5:75978400-76004400 Strong transcription Primary T helper cells fromperipheralblood blood
4 chr5:75978600-76003400 Strong transcription Primary T helper cells PMA-I stimulated --
5 chr5:75980600-76002600 Weak transcription iPS-18 Cell Line embryonic stem cell
6 chr5:75985800-76004400 Weak transcription ES-I3 Cell Line embryonic stem cell
7 chr5:75988400-76004600 Strong transcription Primary T helper 17 cells PMA-I stimulated --
8 chr5:75988600-76007800 Weak transcription Fetal Intestine Large intestine
9 chr5:75988800-76006600 Weak transcription Fetal Muscle Trunk muscle
10 chr5:75988800-76011000 Weak transcription Lung lung
11 chr5:75989600-76010400 Weak transcription Fetal Intestine Small intestine
12 chr5:75991400-76010600 Weak transcription Duodenum Smooth Muscle Duodenum
13 chr5:75991600-76005800 Weak transcription Fetal Muscle Leg muscle
14 chr5:75993800-76004200 Weak transcription H1 Cell Line embryonic stem cell
15 chr5:75994200-76006400 Weak transcription GM12878-XiMat blood
16 chr5:75995800-76004000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
17 chr5:75997200-76010400 Weak transcription HepG2 liver
18 chr5:75997600-76002200 Weak transcription Primary T killer naive cells fromperipheralblood blood
19 chr5:75997800-76004200 Weak transcription HMEC breast
20 chr5:75997800-76010000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
21 chr5:75997800-76010800 Weak transcription Gastric stomach
22 chr5:75997800-76010800 Weak transcription Pancreas Pancrea
23 chr5:75998000-76004200 Weak transcription Spleen Spleen
24 chr5:75998000-76007400 Weak transcription Fetal Stomach stomach
25 chr5:75998200-76010000 Weak transcription Sigmoid Colon Sigmoid Colon
26 chr5:75998400-76010800 Weak transcription Rectal Mucosa Donor 31 rectum
27 chr5:75998600-76009200 Weak transcription Primary T helper naive cells from peripheral blood blood
28 chr5:75998600-76010000 Weak transcription Primary T killer memory cells from peripheral blood blood
29 chr5:75998600-76010600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
30 chr5:75998800-76004200 Weak transcription Duodenum Mucosa Duodenum
31 chr5:75998800-76004200 Weak transcription Rectal Mucosa Donor 29 rectum
32 chr5:75999200-76002200 Enhancers HUVEC blood vessel
33 chr5:75999600-76002600 Weak transcription HUES6 Cell Line embryonic stem cell
34 chr5:75999600-76010400 Weak transcription Primary T helper naive cells fromperipheralblood blood
35 chr5:75999800-76004000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
36 chr5:75999800-76004000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
37 chr5:75999800-76007200 Weak transcription Stomach Mucosa stomach
38 chr5:76000000-76004000 Weak transcription HUES64 Cell Line embryonic stem cell
39 chr5:76000000-76004000 Weak transcription Primary B cells from cord blood blood
40 chr5:76000200-76002600 Weak transcription iPS-20b Cell Line embryonic stem cell
41 chr5:76000400-76002000 Genic enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
42 chr5:76000400-76007200 Weak transcription Primary neutrophils fromperipheralblood blood
43 chr5:76000600-76002200 Enhancers Primary hematopoietic stem cells short term culture blood
44 chr5:76000600-76004200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
45 chr5:76000600-76004400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
46 chr5:76000800-76002200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
47 chr5:76001000-76002000 Genic enhancers Monocytes-CD14+_RO01746 blood
48 chr5:76001000-76003000 Enhancers NHLF lung
49 chr5:76001400-76002000 Enhancers Fetal Lung lung
50 chr5:76001400-76004200 Weak transcription Primary T cells from cord blood blood

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Last update: Aug 31, 2015