The 2.0 version of rSNPBase

Variant report

Variant rs3797451
Chromosome Location chr5:75999977-75999978
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:74 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:75945200-76001000 Strong transcription Monocytes-CD14+_RO01746 blood
2 chr5:75946400-76001000 Strong transcription Primary monocytes fromperipheralblood blood
3 chr5:75948000-76004600 Strong transcription Primary Natural Killer cells fromperipheralblood blood
4 chr5:75951800-76001400 Weak transcription Rectal Smooth Muscle rectum
5 chr5:75977600-76003400 Strong transcription Primary T regulatory cells fromperipheralblood blood
6 chr5:75978400-76001600 Strong transcription Primary T cells fromperipheralblood blood
7 chr5:75978400-76004400 Strong transcription Primary T helper cells fromperipheralblood blood
8 chr5:75978600-76003400 Strong transcription Primary T helper cells PMA-I stimulated --
9 chr5:75980600-76002600 Weak transcription iPS-18 Cell Line embryonic stem cell
10 chr5:75980800-76000200 Strong transcription Primary hematopoietic stem cells blood
11 chr5:75981200-76001600 Weak transcription Primary B cells from peripheral blood blood
12 chr5:75985800-76004400 Weak transcription ES-I3 Cell Line embryonic stem cell
13 chr5:75986600-76000000 Strong transcription Primary B cells from cord blood blood
14 chr5:75987600-76001200 Weak transcription Small Intestine intestine
15 chr5:75987800-76001400 Weak transcription Fetal Lung lung
16 chr5:75988400-76004600 Strong transcription Primary T helper 17 cells PMA-I stimulated --
17 chr5:75988600-76001800 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
18 chr5:75988600-76007800 Weak transcription Fetal Intestine Large intestine
19 chr5:75988800-76006600 Weak transcription Fetal Muscle Trunk muscle
20 chr5:75988800-76011000 Weak transcription Lung lung
21 chr5:75989200-76000000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
22 chr5:75989600-76010400 Weak transcription Fetal Intestine Small intestine
23 chr5:75991000-76000800 Strong transcription Primary mononuclear cells fromperipheralblood Blood
24 chr5:75991400-76010600 Weak transcription Duodenum Smooth Muscle Duodenum
25 chr5:75991600-76005800 Weak transcription Fetal Muscle Leg muscle
26 chr5:75992800-76000400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
27 chr5:75993000-76000200 Strong transcription Primary hematopoietic stem cells short term culture blood
28 chr5:75993000-76000400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
29 chr5:75993200-76000400 Strong transcription Primary neutrophils fromperipheralblood blood
30 chr5:75993400-76001400 Strong transcription Primary T cells from cord blood blood
31 chr5:75993800-76001600 Weak transcription K562 blood
32 chr5:75993800-76004200 Weak transcription H1 Cell Line embryonic stem cell
33 chr5:75994200-76006400 Weak transcription GM12878-XiMat blood
34 chr5:75995800-76004000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
35 chr5:75997200-76010400 Weak transcription HepG2 liver
36 chr5:75997600-76001600 Weak transcription Cortex derived primary cultured neurospheres brain
37 chr5:75997600-76002200 Weak transcription Primary T killer naive cells fromperipheralblood blood
38 chr5:75997800-76000000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
39 chr5:75997800-76000000 Weak transcription Hela-S3 cervix
40 chr5:75997800-76004200 Weak transcription HMEC breast
41 chr5:75997800-76010000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
42 chr5:75997800-76010800 Weak transcription Gastric stomach
43 chr5:75997800-76010800 Weak transcription Pancreas Pancrea
44 chr5:75998000-76001000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
45 chr5:75998000-76001800 Strong transcription Liver Liver
46 chr5:75998000-76004200 Weak transcription Spleen Spleen
47 chr5:75998000-76007400 Weak transcription Fetal Stomach stomach
48 chr5:75998200-76000600 Weak transcription Fetal Thymus thymus
49 chr5:75998200-76010000 Weak transcription Sigmoid Colon Sigmoid Colon
50 chr5:75998400-76001200 Weak transcription Fetal Adrenal Gland Adrenal Gland

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Last update: Aug 31, 2015