The 2.0 version of rSNPBase

Variant report

Variant rs34921325
Chromosome Location chr5:76007554-76007555
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:47 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:75988600-76007800 Weak transcription Fetal Intestine Large intestine
2 chr5:75988800-76011000 Weak transcription Lung lung
3 chr5:75989600-76010400 Weak transcription Fetal Intestine Small intestine
4 chr5:75991400-76010600 Weak transcription Duodenum Smooth Muscle Duodenum
5 chr5:75997200-76010400 Weak transcription HepG2 liver
6 chr5:75997800-76010000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
7 chr5:75997800-76010800 Weak transcription Gastric stomach
8 chr5:75997800-76010800 Weak transcription Pancreas Pancrea
9 chr5:75998200-76010000 Weak transcription Sigmoid Colon Sigmoid Colon
10 chr5:75998400-76010800 Weak transcription Rectal Mucosa Donor 31 rectum
11 chr5:75998600-76009200 Weak transcription Primary T helper naive cells from peripheral blood blood
12 chr5:75998600-76010000 Weak transcription Primary T killer memory cells from peripheral blood blood
13 chr5:75998600-76010600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
14 chr5:75999600-76010400 Weak transcription Primary T helper naive cells fromperipheralblood blood
15 chr5:76001800-76010200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
16 chr5:76003000-76010400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
17 chr5:76003400-76008600 Weak transcription Primary T regulatory cells fromperipheralblood blood
18 chr5:76003400-76008800 Weak transcription Primary T helper cells PMA-I stimulated --
19 chr5:76004200-76007600 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
20 chr5:76004200-76007600 Enhancers NHLF lung
21 chr5:76004400-76007600 Weak transcription Primary B cells from cord blood blood
22 chr5:76004400-76010000 Weak transcription Primary T helper cells fromperipheralblood blood
23 chr5:76004600-76008000 Weak transcription Primary T cells from cord blood blood
24 chr5:76004600-76010000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
25 chr5:76004600-76010400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
26 chr5:76004800-76007800 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
27 chr5:76004800-76010600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
28 chr5:76005000-76007600 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
29 chr5:76005000-76007600 Enhancers NH-A brain
30 chr5:76005000-76009000 Weak transcription Primary monocytes fromperipheralblood blood
31 chr5:76005000-76010400 Weak transcription Placenta Placenta
32 chr5:76005200-76010000 Weak transcription Primary hematopoietic stem cells short term culture blood
33 chr5:76005200-76010600 Weak transcription Liver Liver
34 chr5:76005600-76009200 Weak transcription Monocytes-CD14+_RO01746 blood
35 chr5:76005800-76010000 Weak transcription Primary hematopoietic stem cells blood
36 chr5:76006000-76007800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
37 chr5:76006000-76007800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
38 chr5:76006200-76007600 Enhancers Muscle Satellite Cultured Cells --
39 chr5:76006200-76010600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
40 chr5:76006400-76008200 Enhancers GM12878-XiMat blood
41 chr5:76006800-76007600 Enhancers NHDF-Ad bronchial
42 chr5:76006800-76007800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
43 chr5:76007400-76007600 Enhancers Fetal Stomach stomach
44 chr5:76007400-76007600 Enhancers HMEC breast
45 chr5:76007400-76007600 Enhancers NHEK skin
46 chr5:76007400-76008200 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
47 chr5:76007400-76010400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived

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Last update: Aug 31, 2015