Variant report

Variant	rs13190943
Chromosome Location	chr6:37414355-37414356
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37392263..37395409-chr6:37412629..37415266,3	K562	blood:
2	chr6:37405566..37410075-chr6:37411799..37416398,4	K562	blood:
3	chr6:37412988..37415728-chr6:37427713..37429537,2	K562	blood:
4	chr6:37410272..37412594-chr6:37412669..37415128,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs13203092	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13212461	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13216875	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13220464	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16889902	1.00[CHB][hapmap]
rs34273308	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34327773	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34624330	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71569375	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71569377	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71569378	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9462317	1.00[CHB][hapmap]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37402200-37417800	Weak transcription	Small Intestine	intestine
2	chr6:37402200-37427800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:37403000-37434400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr6:37403200-37418400	Strong transcription	Fetal Stomach	stomach
5	chr6:37403200-37422000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:37403200-37423800	Strong transcription	Fetal Thymus	thymus
7	chr6:37403200-37432000	Strong transcription	Primary neutrophils fromperipheralblood	blood
8	chr6:37403200-37432600	Strong transcription	Placenta	Placenta
9	chr6:37403200-37433200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
10	chr6:37403400-37422000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr6:37403400-37423800	Strong transcription	K562	blood
12	chr6:37403400-37432000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr6:37405000-37414400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr6:37407800-37417000	Strong transcription	Fetal Brain Female	brain
15	chr6:37408800-37433400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr6:37409200-37426400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr6:37410000-37422200	Strong transcription	HUES48 Cell Line	embryonic stem cell
18	chr6:37410400-37432400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:37410600-37434200	Strong transcription	Primary T cells from cord blood	blood
20	chr6:37411200-37422000	Weak transcription	Right Atrium	heart
21	chr6:37411200-37428200	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr6:37411200-37431400	Strong transcription	GM12878-XiMat	blood
23	chr6:37411200-37432800	Strong transcription	Primary B cells from cord blood	blood
24	chr6:37411200-37433200	Strong transcription	Fetal Intestine Small	intestine
25	chr6:37411400-37415000	Strong transcription	HSMM	muscle
26	chr6:37411400-37415400	Strong transcription	Cortex derived primary cultured neurospheres	brain
27	chr6:37411400-37421800	Strong transcription	Brain Inferior Temporal Lobe	brain
28	chr6:37411400-37427600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr6:37411400-37432200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr6:37411400-37433600	Strong transcription	Dnd41	blood
31	chr6:37411400-37437200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr6:37411600-37415000	Strong transcription	NHDF-Ad	bronchial
33	chr6:37411600-37415400	Strong transcription	Brain Cingulate Gyrus	brain
34	chr6:37411600-37415800	Strong transcription	Primary T killer memory cells from peripheral blood	blood
35	chr6:37411600-37416400	Strong transcription	HepG2	liver
36	chr6:37411600-37417000	Strong transcription	Brain Germinal Matrix	brain
37	chr6:37411600-37418200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr6:37411600-37419200	Strong transcription	Stomach Smooth Muscle	stomach
39	chr6:37411600-37421200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr6:37411600-37421200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr6:37411600-37421400	Strong transcription	Primary hematopoietic stem cells	blood
42	chr6:37411600-37421400	Strong transcription	Rectal Mucosa Donor 29	rectum
43	chr6:37411600-37421400	Strong transcription	Osteobl	bone
44	chr6:37411600-37421600	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr6:37411600-37424800	Strong transcription	Skeletal Muscle Female	skeletal muscle
46	chr6:37411600-37427200	Strong transcription	Fetal Muscle Leg	muscle
47	chr6:37411600-37427800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr6:37411600-37431800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr6:37411600-37431800	Strong transcription	Duodenum Mucosa	Duodenum
50	chr6:37411600-37432000	Strong transcription	Primary T cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links