Variant report

Variant	rs34624330
Chromosome Location	chr6:37396108-37396109
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:37395595-37396191	K562	blood:	n/a	n/a
2	TBP	chr6:37395914-37396182	K562	blood:	n/a	n/a
3	TEAD4	chr6:37395386-37396303	K562	blood:	n/a	n/a

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:37349539..37351113-chr6:37394191..37396752,2	K562	blood:
2	chr6:37393939..37397239-chr6:37426507..37429534,4	K562	blood:
3	chr6:37364657..37367034-chr6:37394152..37396378,2	K562	blood:
4	chr6:37390262..37393860-chr6:37393896..37398106,6	MCF-7	breast:
5	chr6:37326963..37329509-chr6:37395031..37398456,3	K562	blood:
6	chr6:37366536..37368392-chr6:37392528..37396420,3	K562	blood:
7	chr6:37382160..37383794-chr6:37394542..37397264,2	K562	blood:
8	chr6:37394420..37396941-chr6:37406816..37408939,3	K562	blood:
9	chr6:37385441..37389491-chr6:37393675..37396970,4	K562	blood:
10	chr18:46502489..46505437-chr6:37394352..37396651,2	MCF-7	breast:
11	chr6:37394541..37397125-chr6:37465696..37468350,2	K562	blood:
12	chr6:37393178..37396451-chr6:37404709..37407721,4	K562	blood:
13	chr6:37395898..37398145-chr6:37408899..37411047,2	K562	blood:
14	chr6:37348302..37351113-chr6:37394191..37396575,2	K562	blood:

No data

No data

No data

Variant related genes	Relation type
CMTR1	TF binding region
ENSG00000239953	Chromatin interaction
ENSG00000198937	Chromatin interaction
ENSG00000137200	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs13190943	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13203092	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13212461	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13216875	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13220464	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34273308	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34327773	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71569375	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71569377	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs71569378	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1807065	chr6:37379409-37399185	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37395000-37396200	Flanking Active TSS	K562	blood
2	chr6:37395200-37400000	Weak transcription	Duodenum Mucosa	Duodenum
3	chr6:37395200-37400000	Weak transcription	HepG2	liver
4	chr6:37395800-37396200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:37396000-37396200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:37396000-37396200	Enhancers	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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