Variant report

Variant	rs71569378
Chromosome Location	chr6:37461018-37461019
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37460921..37462916-chr6:37482767..37484311,2	MCF-7	breast:
2	chr6:37458847..37461415-chr6:37462946..37464920,2	MCF-7	breast:
3	chr6:37454869..37462977-chr6:37463391..37469245,23	K562	blood:
4	chr6:37435201..37437233-chr6:37461003..37462712,2	K562	blood:
5	chr6:37458120..37463201-chr6:37463391..37469475,12	K562	blood:

Variant related genes	Relation type
ENSG00000198937	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs13190943	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13194564	0.82[EUR][1000 genomes]
rs13203092	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13212461	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13216875	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13220464	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34273308	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34327773	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34624330	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35231469	0.82[AMR][1000 genomes]
rs71569375	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs71569377	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752124	chr6:37416219-37680622	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37443600-37466600	Weak transcription	A549	lung
2	chr6:37446800-37466600	Weak transcription	Hela-S3	cervix
3	chr6:37447600-37466800	Weak transcription	HSMM	muscle
4	chr6:37448400-37466800	Weak transcription	Stomach Mucosa	stomach
5	chr6:37450200-37467200	Weak transcription	Small Intestine	intestine
6	chr6:37451400-37465600	Weak transcription	Colonic Mucosa	Colon
7	chr6:37451600-37466800	Weak transcription	Rectal Smooth Muscle	rectum
8	chr6:37451600-37467000	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr6:37451800-37462400	Enhancers	Fetal Brain Male	brain
10	chr6:37451800-37466600	Weak transcription	Primary B cells from cord blood	blood
11	chr6:37451800-37466800	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr6:37452000-37462200	Weak transcription	Aorta	Aorta
13	chr6:37452000-37466600	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr6:37452000-37466800	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr6:37452200-37466800	Weak transcription	NHLF	lung
16	chr6:37452600-37466800	Weak transcription	NHDF-Ad	bronchial
17	chr6:37452600-37466800	Weak transcription	Osteobl	bone
18	chr6:37453200-37466600	Weak transcription	Duodenum Mucosa	Duodenum
19	chr6:37453400-37466800	Weak transcription	Fetal Intestine Large	intestine
20	chr6:37454600-37464400	Weak transcription	K562	blood
21	chr6:37455000-37461800	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr6:37455600-37461800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
23	chr6:37455600-37463800	Enhancers	Primary T helper naive cells from peripheral blood	blood
24	chr6:37456200-37464400	Enhancers	Primary T cells fromperipheralblood	blood
25	chr6:37456400-37461200	Enhancers	Fetal Thymus	thymus
26	chr6:37456400-37461800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
27	chr6:37456400-37467000	Weak transcription	Fetal Intestine Small	intestine
28	chr6:37456600-37466800	Weak transcription	Monocytes-CD14+_RO01746	blood
29	chr6:37457000-37461800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
30	chr6:37457200-37461200	Enhancers	Fetal Muscle Trunk	muscle
31	chr6:37457200-37461400	Enhancers	Fetal Muscle Leg	muscle
32	chr6:37457200-37461600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr6:37457200-37461800	Enhancers	H1 Cell Line	embryonic stem cell
34	chr6:37457400-37463000	Enhancers	GM12878-XiMat	blood
35	chr6:37457800-37461400	Enhancers	Brain Hippocampus Middle	brain
36	chr6:37457800-37461600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr6:37458000-37461400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr6:37458000-37466200	Weak transcription	Lung	lung
39	chr6:37458000-37466800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr6:37458200-37461600	Enhancers	Fetal Stomach	stomach
41	chr6:37458200-37466800	Weak transcription	Primary hematopoietic stem cells	blood
42	chr6:37458400-37466200	Weak transcription	HepG2	liver
43	chr6:37459000-37466800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr6:37459200-37461200	Enhancers	iPS-20b Cell Line	embryonic stem cell
45	chr6:37459200-37461600	Enhancers	iPS-18 Cell Line	embryonic stem cell
46	chr6:37459400-37461400	Enhancers	Duodenum Smooth Muscle	Duodenum
47	chr6:37459400-37466600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr6:37459400-37466800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr6:37459400-37466800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr6:37459400-37467000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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