Variant report
| Variant | rs13199707 |
|---|---|
| Chromosome Location | chr6:87774452-87774453 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:87765517..87767678-chr6:87772617..87775586,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs11753367 | 0.86[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs11964150 | 0.88[EUR][1000 genomes] |
| rs11968873 | 0.88[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs13218179 | 0.88[AMR][1000 genomes] |
| rs1590428 | 0.84[AMR][1000 genomes] |
| rs35974519 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs4986869 | 0.87[AMR][1000 genomes] |
| rs6902324 | 0.90[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs73497586 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9294364 | 0.86[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs9294365 | 0.88[AMR][1000 genomes] |
| rs9342103 | 0.86[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs9344670 | 0.85[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs9344671 | 0.90[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs9351112 | 0.86[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs9353447 | 0.86[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs9359727 | 0.89[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs9359728 | 0.86[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs9359730 | 0.85[AMR][1000 genomes] |
| rs9362385 | 0.86[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs9362386 | 0.90[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs9444466 | 0.86[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs9444467 | 0.86[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs9444468 | 0.86[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs9450611 | 0.84[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs9450612 | 0.86[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs9450613 | 0.85[AMR][1000 genomes];0.82[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1024751 | chr6:87433199-87908721 | Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 27 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:87769000-87784000 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
