Variant report

Variant	rs1590428
Chromosome Location	chr6:87756580-87756581
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs13199707	0.84[AMR][1000 genomes]
rs35974519	0.83[AMR][1000 genomes]
rs4707349	0.81[CEU][hapmap]
rs73497586	0.83[AMR][1000 genomes]
rs9294365	0.83[MEX][hapmap]
rs9294366	0.81[CEU][hapmap]
rs932742	0.81[CEU][hapmap];0.86[MEX][hapmap]
rs9342103	0.83[MEX][hapmap]
rs9359727	0.87[MEX][hapmap]
rs9359730	0.84[AMR][1000 genomes]
rs9450613	0.83[MEX][hapmap]
rs9450624	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024751	chr6:87433199-87908721	Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs1590428	C6orf162	cis	parietal	SCAN
rs1590428	C6orf162	cis	cerebellum	SCAN
rs1590428	MDN1	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:87755200-87759200	Weak transcription	Primary B cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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