Variant report

Variant	rs932742
Chromosome Location	chr6:87804685-87804686
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs13218179	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1610330	0.80[EUR][1000 genomes]
rs2240461	0.86[ASW][hapmap];0.85[CEU][hapmap];0.86[TSI][hapmap]
rs4469259	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4706290	0.87[CEU][hapmap]
rs4707349	0.90[CEU][hapmap];0.89[TSI][hapmap]
rs4986869	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7773715	0.90[CEU][hapmap]
rs9294365	0.86[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9294366	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9342103	0.91[GIH][hapmap]
rs9359727	0.91[GIH][hapmap]
rs9359730	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9444472	0.80[EUR][1000 genomes]
rs9450613	0.90[GIH][hapmap]
rs9450624	0.90[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024751	chr6:87433199-87908721	Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs932742	MDN1	cis	parietal	SCAN
rs932742	C6orf162	cis	cerebellum	SCAN
rs932742	C6orf162	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:87801400-87804800	Active TSS	Placenta	Placenta
2	chr6:87801400-87805000	Active TSS	Hela-S3	cervix
3	chr6:87803000-87804800	Enhancers	NHLF	lung
4	chr6:87803600-87816000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links