Variant report

Variant	rs4469259
Chromosome Location	chr6:87813181-87813182
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs13218179	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1610330	0.80[EUR][1000 genomes]
rs4986869	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9294365	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9294366	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs932742	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9359730	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9444472	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024751	chr6:87433199-87908721	Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4469259	C6orf162	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:87803600-87816000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:87809000-87814200	Enhancers	Fetal Heart	heart
3	chr6:87809400-87814000	Weak transcription	GM12878-XiMat	blood
4	chr6:87812400-87814200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr6:87812600-87813800	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr6:87812600-87814000	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr6:87812600-87814400	Weak transcription	Primary neutrophils fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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