Variant report

Variant	rs9294366
Chromosome Location	chr6:87811804-87811805
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs13218179	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1610330	0.80[EUR][1000 genomes]
rs2240461	0.85[CEU][hapmap]
rs4469259	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4706290	0.82[CEU][hapmap]
rs4707349	0.90[CEU][hapmap]
rs4986869	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7773715	0.86[CEU][hapmap]
rs9294365	0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs932742	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9359730	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9444472	0.80[EUR][1000 genomes]
rs9450624	0.91[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024751	chr6:87433199-87908721	Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9294366	C6orf162	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:87803600-87816000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:87807000-87812600	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr6:87809000-87814200	Enhancers	Fetal Heart	heart
4	chr6:87809400-87814000	Weak transcription	GM12878-XiMat	blood
5	chr6:87810800-87812200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:87811800-87812400	Enhancers	Brain Germinal Matrix	brain
7	chr6:87811800-87812400	Enhancers	Pancreatic Islets	Pancreatic Islet
8	chr6:87811800-87812600	Enhancers	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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