Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11753367	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11964150	0.85[EUR][1000 genomes]
rs11968873	0.87[AMR][1000 genomes]
rs13199707	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13218179	0.87[AMR][1000 genomes]
rs1590428	0.83[AMR][1000 genomes]
rs4986869	0.86[AMR][1000 genomes]
rs6902324	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73497586	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9294364	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9294365	0.87[AMR][1000 genomes]
rs9342103	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9344670	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9344671	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9351112	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9353447	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9359727	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9359728	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9359730	0.84[AMR][1000 genomes]
rs9362385	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9362386	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9444466	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9444467	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9444468	0.85[AMR][1000 genomes]
rs9450611	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9450612	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9450613	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024751	chr6:87433199-87908721	Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:87769000-87784000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:87777000-87779800	Weak transcription	Fetal Intestine Large	intestine
3	chr6:87777000-87779800	Weak transcription	Fetal Intestine Small	intestine
4	chr6:87777400-87778600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr6:87777400-87778800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:87777600-87778400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr6:87777600-87778600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr6:87777600-87779800	Weak transcription	Duodenum Mucosa	Duodenum
9	chr6:87777800-87778200	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr6:87777800-87778400	Weak transcription	Stomach Mucosa	stomach
11	chr6:87778000-87778400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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