Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:54337437..54340096-chr6:54340126..54342389,2	MCF-7	breast:
2	chr6:54334351..54336130-chr6:54337919..54340373,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10948827	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12526335	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12529259	0.89[ASN][1000 genomes]
rs1303838	0.89[ASN][1000 genomes]
rs1648211	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17828849	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1895835	0.89[ASN][1000 genomes]
rs2092413	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3909649	0.93[ASN][1000 genomes]
rs4715462	0.93[ASN][1000 genomes]
rs514289	0.85[ASN][1000 genomes]
rs522139	0.85[ASN][1000 genomes]
rs567013	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs569278	0.85[ASN][1000 genomes]
rs605743	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs607061	0.85[ASN][1000 genomes]
rs683560	0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7450725	0.89[ASN][1000 genomes]
rs9464088	0.89[ASN][1000 genomes]
rs9464089	0.89[ASN][1000 genomes]
rs9464091	0.94[ASN][1000 genomes]
rs9464092	0.93[ASN][1000 genomes]
rs9464093	0.93[ASN][1000 genomes]
rs9474878	0.90[ASN][1000 genomes]
rs9474879	0.90[ASN][1000 genomes]
rs9474882	0.86[ASN][1000 genomes]
rs9474888	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067663	chr6:53796341-54449718	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529158	chr6:53796341-54449718	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv427757	chr6:54296552-54507210	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv970682	chr6:54325591-54375255	Enhancers Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54337000-54339800	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr6:54338200-54338800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:54338200-54338800	Enhancers	NHEK	skin
4	chr6:54338200-54339000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr6:54338400-54338800	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr6:54338600-54339200	Enhancers	H1 Cell Line	embryonic stem cell
7	chr6:54338600-54339200	Enhancers	H9 Cell Line	embryonic stem cell
8	chr6:54338600-54339200	Enhancers	Placenta Amnion	Placenta Amnion
9	chr6:54338600-54339400	Enhancers	ES-I3 Cell Line	embryonic stem cell

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