Variant report

Variant	rs13202571
Chromosome Location	chr6:71916222-71916223
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs13195157	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13207050	1.00[ASN][1000 genomes]
rs13213483	1.00[ASN][1000 genomes]
rs13216322	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13219438	1.00[ASN][1000 genomes]
rs34452013	1.00[ASN][1000 genomes]
rs34618191	1.00[ASN][1000 genomes]
rs34823911	1.00[ASN][1000 genomes]
rs35820387	1.00[ASN][1000 genomes]
rs35915602	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55727847	1.00[ASN][1000 genomes]
rs67631418	1.00[ASN][1000 genomes]
rs6900357	1.00[ASN][1000 genomes]
rs72926590	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886149	chr6:71875777-71936292	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv886150	chr6:71888871-71936292	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1016393	chr6:71890237-71941786	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv526921	chr6:71890237-71950242	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71914400-71916600	Enhancers	Muscle Satellite Cultured Cells	--
2	chr6:71914800-71916400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:71914800-71916600	Enhancers	HSMM	muscle
4	chr6:71915400-71917600	Weak transcription	Fetal Kidney	kidney
5	chr6:71915600-71917000	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr6:71916200-71921600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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