Variant report

Variant	rs6900357
Chromosome Location	chr6:71913710-71913711
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs13195157	1.00[ASN][1000 genomes]
rs13202571	1.00[ASN][1000 genomes]
rs13207050	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13213483	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13215775	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13219438	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34452013	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34618191	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34823911	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35820387	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35915602	1.00[ASN][1000 genomes]
rs55727847	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67631418	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72926590	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886149	chr6:71875777-71936292	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv886150	chr6:71888871-71936292	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1016393	chr6:71890237-71941786	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv526921	chr6:71890237-71950242	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71908000-71914400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:71908000-71915200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:71908000-71915400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:71908600-71914400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr6:71909200-71914200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr6:71909600-71914000	Weak transcription	Brain Substantia Nigra	brain
7	chr6:71910200-71914600	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr6:71912600-71913800	Enhancers	HSMMtube	muscle
9	chr6:71912600-71915200	Weak transcription	Fetal Kidney	kidney
10	chr6:71913000-71915200	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr6:71913400-71913800	Weak transcription	HSMM	muscle
12	chr6:71913400-71914400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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