Variant report

Variant	rs55727847
Chromosome Location	chr6:71903662-71903663
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs13195157	1.00[ASN][1000 genomes]
rs13202571	1.00[ASN][1000 genomes]
rs13207050	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13213483	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13215775	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13219438	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34452013	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34618191	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34823911	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35820387	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35915602	1.00[ASN][1000 genomes]
rs67631418	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6900357	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72926590	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886149	chr6:71875777-71936292	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv886150	chr6:71888871-71936292	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1016393	chr6:71890237-71941786	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv526921	chr6:71890237-71950242	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71891800-71907200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:71898000-71907400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:71901400-71906600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr6:71902800-71904200	Weak transcription	A549	lung
5	chr6:71902800-71904200	Weak transcription	HSMM	muscle
6	chr6:71903200-71906800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:71903200-71907000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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