Variant report

Variant	rs13203073
Chromosome Location	chr6:25067466-25067467
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:25060649..25063407-chr6:25066068..25067636,2	K562	blood:
2	chr6:25059218..25061939-chr6:25066118..25068353,2	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs12524842	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12525328	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12525405	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12528227	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12661796	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12663160	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12665174	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13195161	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13196712	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13209444	0.91[EUR][1000 genomes]
rs13218879	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1562422	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1562423	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1597010	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1597011	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1597012	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs160034	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1900551	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1923192	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1923193	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs192773	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2273671	0.81[EUR][1000 genomes]
rs302992	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs303879	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs303880	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs303884	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34322558	0.93[EUR][1000 genomes]
rs34475409	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34693126	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35028017	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35553146	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs36030790	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs36078207	0.91[EUR][1000 genomes]
rs3792974	0.89[EUR][1000 genomes]
rs3792983	0.89[EUR][1000 genomes]
rs4711071	0.86[ASN][1000 genomes]
rs4711072	0.86[ASN][1000 genomes]
rs4711073	0.86[ASN][1000 genomes]
rs4711075	0.91[EUR][1000 genomes]
rs4712882	0.84[ASN][1000 genomes]
rs56108659	0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67240854	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67795839	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67927735	0.93[EUR][1000 genomes]
rs72826363	0.85[EUR][1000 genomes]
rs7738141	0.89[EUR][1000 genomes]
rs895676	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022966	chr6:24763776-25154212	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv538160	chr6:24763776-25154212	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv1023989	chr6:24930362-25285679	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
4	nsv830610	chr6:24951741-25124239	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	nsv830611	chr6:25039374-25199112	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:25057600-25080400	Weak transcription	Thymus	Thymus
2	chr6:25063000-25069000	Weak transcription	Adipose Nuclei	Adipose
3	chr6:25063000-25070800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:25063200-25069200	Weak transcription	Placenta	Placenta
5	chr6:25063200-25070800	Weak transcription	Fetal Muscle Leg	muscle
6	chr6:25063200-25079200	Weak transcription	Ovary	ovary
7	chr6:25065000-25068200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:25065000-25069400	Weak transcription	NHDF-Ad	bronchial
9	chr6:25066000-25067600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:25066000-25067600	Enhancers	HSMMtube	muscle
11	chr6:25066400-25070800	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr6:25067400-25080400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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