Variant report

Variant	rs67927735
Chromosome Location	chr6:25070661-25070662
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:24719082..24721541-chr6:25070206..25072923,2	K562	blood:

Variant related genes	Relation type
ENSG00000112308	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11757374	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs13195161	0.82[EUR][1000 genomes]
rs13203073	0.93[EUR][1000 genomes]
rs13209444	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs160034	0.92[EUR][1000 genomes]
rs192773	0.92[EUR][1000 genomes]
rs2273671	0.92[AFR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs302992	0.92[EUR][1000 genomes]
rs303879	0.92[EUR][1000 genomes]
rs303880	0.92[EUR][1000 genomes]
rs303884	0.92[EUR][1000 genomes]
rs34322558	0.92[EUR][1000 genomes]
rs34693126	0.87[EUR][1000 genomes]
rs36078207	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3792974	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3792983	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4711074	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4711075	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56108659	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs71555176	0.82[AMR][1000 genomes]
rs72826363	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7738141	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs895676	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022966	chr6:24763776-25154212	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv538160	chr6:24763776-25154212	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv1023989	chr6:24930362-25285679	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
4	nsv830610	chr6:24951741-25124239	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	nsv830611	chr6:25039374-25199112	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:25057600-25080400	Weak transcription	Thymus	Thymus
2	chr6:25063000-25070800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr6:25063200-25070800	Weak transcription	Fetal Muscle Leg	muscle
4	chr6:25063200-25079200	Weak transcription	Ovary	ovary
5	chr6:25066400-25070800	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr6:25067400-25080400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:25067600-25070800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:25067600-25084600	Weak transcription	HSMMtube	muscle
9	chr6:25069800-25070800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:25069800-25070800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr6:25069800-25070800	Weak transcription	Placenta	Placenta
12	chr6:25069800-25084000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:25070200-25071000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
14	chr6:25070400-25070800	Weak transcription	Adipose Nuclei	Adipose
15	chr6:25070600-25070800	Enhancers	Primary B cells from peripheral blood	blood
16	chr6:25070600-25070800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
17	chr6:25070600-25070800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr6:25070600-25070800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr6:25070600-25070800	Enhancers	Dnd41	blood

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