Variant report

Variant	rs4711074
Chromosome Location	chr6:25075056-25075057
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1002539	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1002540	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1037167	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1037168	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11757374	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13209444	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1447242	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2273671	0.80[ASN][1000 genomes]
rs36078207	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs3792974	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs3792976	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3792977	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3792978	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3792982	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3792983	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs3812107	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3812108	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3812109	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3828730	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3828731	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4711075	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4711076	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4712884	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67927735	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6928752	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6928763	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs71555176	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72826363	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7738141	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9461098	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9467386	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9467392	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022966	chr6:24763776-25154212	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv538160	chr6:24763776-25154212	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv1023989	chr6:24930362-25285679	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
4	nsv830610	chr6:24951741-25124239	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	nsv830611	chr6:25039374-25199112	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:25057600-25080400	Weak transcription	Thymus	Thymus
2	chr6:25063200-25079200	Weak transcription	Ovary	ovary
3	chr6:25067400-25080400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr6:25067600-25084600	Weak transcription	HSMMtube	muscle
5	chr6:25069800-25084000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr6:25071000-25080400	Weak transcription	Rectal Smooth Muscle	rectum
7	chr6:25071000-25084400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr6:25071200-25080000	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr6:25071200-25080200	Weak transcription	Dnd41	blood
10	chr6:25071200-25080400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr6:25071200-25080800	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr6:25071200-25080800	Weak transcription	Fetal Thymus	thymus
13	chr6:25071200-25082000	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr6:25071200-25082400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr6:25071200-25082600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr6:25071200-25083800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr6:25071200-25083800	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr6:25071200-25084000	Weak transcription	Primary B cells from peripheral blood	blood
19	chr6:25071200-25084000	Weak transcription	Placenta	Placenta
20	chr6:25071200-25084000	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr6:25071200-25084600	Weak transcription	Adipose Nuclei	Adipose
22	chr6:25071200-25085200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr6:25071200-25085400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr6:25071400-25084800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr6:25071400-25085600	Weak transcription	Primary B cells from cord blood	blood
26	chr6:25072200-25080600	Weak transcription	Primary T cells from cord blood	blood

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