Variant report

Variant	rs13204219
Chromosome Location	chr6:70378796-70378797
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:70377788..70380653-chr6:70882323..70884515,2	K562	blood:
2	chr6:70378773..70380366-chr6:70383381..70386352,2	K562	blood:
3	chr6:70378299..70380023-chr6:70421713..70423506,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LMBRD1-1	chr6:70378713-70379029	NONHSAT113422

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1026441	0.89[AFR][1000 genomes]
rs10945188	0.81[AFR][1000 genomes]
rs12175229	0.88[AFR][1000 genomes]
rs12661224	0.88[AFR][1000 genomes]
rs1542412	0.89[AFR][1000 genomes]
rs17765037	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2045444	0.89[AFR][1000 genomes]
rs2125022	0.88[AFR][1000 genomes]
rs2168713	0.80[AFR][1000 genomes]
rs2881080	0.85[AFR][1000 genomes]
rs34064969	0.80[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs35214058	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3823079	0.87[AFR][1000 genomes]
rs4516910	0.89[AFR][1000 genomes]
rs45559535	0.88[AFR][1000 genomes]
rs4706273	0.88[AFR][1000 genomes]
rs59510607	0.82[AFR][1000 genomes]
rs61305080	0.80[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs62408993	0.87[AFR][1000 genomes]
rs67678871	0.83[AFR][1000 genomes]
rs68181489	0.81[AFR][1000 genomes]
rs727237	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72910810	0.88[AFR][1000 genomes]
rs8180582	0.89[AFR][1000 genomes]
rs921972	0.82[AFR][1000 genomes]
rs9342769	0.86[AFR][1000 genomes]
rs9342773	0.82[AFR][1000 genomes]
rs9346332	0.88[AFR][1000 genomes]
rs9346343	0.88[AFR][1000 genomes]
rs9351772	0.88[AFR][1000 genomes]
rs9354881	0.88[AFR][1000 genomes]
rs9354883	0.83[AFR][1000 genomes]
rs9354888	0.82[AFR][1000 genomes]
rs9354889	0.81[AFR][1000 genomes]
rs9360397	0.82[AFR][1000 genomes]
rs9364051	0.88[AFR][1000 genomes]
rs9364054	0.86[AFR][1000 genomes]
rs9364057	0.85[AFR][1000 genomes]
rs9364060	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886140	chr6:70354682-70728202	Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70374000-70380600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:70374200-70382200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:70374200-70383200	Weak transcription	Fetal Muscle Leg	muscle
4	chr6:70375800-70381800	Weak transcription	GM12878-XiMat	blood
5	chr6:70376400-70382600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:70376600-70380200	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr6:70376800-70382400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:70377200-70380800	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr6:70377600-70382400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:70377600-70392800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr6:70377800-70380000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr6:70378200-70380000	Weak transcription	Liver	Liver
13	chr6:70378400-70380000	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr6:70378400-70380200	Weak transcription	Primary B cells from cord blood	blood
15	chr6:70378400-70380200	Weak transcription	Stomach Smooth Muscle	stomach
16	chr6:70378400-70381600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr6:70378400-70382200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr6:70378400-70383200	Weak transcription	Aorta	Aorta
19	chr6:70378400-70388000	Weak transcription	Esophagus	oesophagus
20	chr6:70378400-70392600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr6:70378600-70380200	Weak transcription	Fetal Thymus	thymus
22	chr6:70378600-70380600	Weak transcription	Primary T cells from cord blood	blood
23	chr6:70378600-70380600	Weak transcription	Duodenum Mucosa	Duodenum
24	chr6:70378600-70383600	Weak transcription	Brain Anterior Caudate	brain
25	chr6:70378600-70384000	Weak transcription	Placenta	Placenta
26	chr6:70378600-70384200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links