Variant report

Variant	rs727237
Chromosome Location	chr6:70376041-70376042
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1026441	0.89[AFR][1000 genomes]
rs10945188	0.81[AFR][1000 genomes]
rs12175229	0.88[AFR][1000 genomes]
rs12661224	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs13204219	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1542412	0.89[AFR][1000 genomes]
rs17765037	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1902654	1.00[YRI][hapmap]
rs2045444	0.87[YRI][hapmap];0.89[AFR][1000 genomes]
rs2125022	0.88[AFR][1000 genomes]
rs2168713	0.80[AFR][1000 genomes]
rs2881080	0.85[AFR][1000 genomes]
rs34064969	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs35214058	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3752790	0.85[YRI][hapmap]
rs3823079	0.87[AFR][1000 genomes]
rs4516910	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs45559535	0.88[AFR][1000 genomes]
rs4706273	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs59510607	0.82[AFR][1000 genomes]
rs61305080	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62408993	0.87[AFR][1000 genomes]
rs67678871	0.83[AFR][1000 genomes]
rs68181489	0.81[AFR][1000 genomes]
rs72910810	0.88[AFR][1000 genomes]
rs8180582	0.89[AFR][1000 genomes]
rs921972	0.82[AFR][1000 genomes]
rs9342769	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs9342773	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs9342777	0.84[YRI][hapmap]
rs9346332	0.88[AFR][1000 genomes]
rs9346343	0.88[AFR][1000 genomes]
rs9346350	1.00[YRI][hapmap]
rs9346353	0.81[YRI][hapmap]
rs9351772	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs9354881	0.88[AFR][1000 genomes]
rs9354883	0.83[AFR][1000 genomes]
rs9354888	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs9354889	0.81[AFR][1000 genomes]
rs9360397	0.81[YRI][hapmap];0.82[AFR][1000 genomes]
rs9364051	0.88[AFR][1000 genomes]
rs9364054	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs9364057	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs9364060	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886140	chr6:70354682-70728202	Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70374000-70380600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:70374200-70382200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:70374200-70383200	Weak transcription	Fetal Muscle Leg	muscle
4	chr6:70375200-70376400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:70375800-70381800	Weak transcription	GM12878-XiMat	blood

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