Variant report

Variant	rs1320544
Chromosome Location	chr9:96655573-96655574
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96651911..96654186-chr9:96654605..96657124,2	MCF-7	breast:
2	chr9:96648101..96650436-chr9:96654606..96657253,2	MCF-7	breast:
3	chr9:96655426..96659394-chr9:96661426..96665501,6	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10114408	0.82[EUR][1000 genomes]
rs10115020	0.80[EUR][1000 genomes]
rs10115047	0.82[EUR][1000 genomes]
rs10115198	0.87[EUR][1000 genomes]
rs10761297	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10761303	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10761304	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10821253	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10821254	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10821255	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10821256	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10821257	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10821258	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10992954	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10992960	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10992961	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10992962	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11792740	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1320545	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1890374	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1890376	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1890378	0.95[CEU][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1890379	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1890380	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1933672	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1933673	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1933674	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1933675	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2153062	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2153067	0.91[EUR][1000 genomes]
rs3996255	0.82[EUR][1000 genomes]
rs4484756	0.82[EUR][1000 genomes]
rs57222595	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6479519	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7030088	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7033563	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7035672	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7047570	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7048848	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893588	chr9:96620419-96668352	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv893589	chr9:96624645-96884544	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv1053137	chr9:96644876-96683214	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv1046904	chr9:96647940-96689327	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1035418	chr9:96647940-96711409	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Active TSS Strong transcription	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96654000-96655800	ZNF genes & repeats	HepG2	liver
2	chr9:96654600-96655800	Weak transcription	Pancreas	Pancrea
3	chr9:96654800-96656000	Weak transcription	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links