Variant report

Variant	rs1890376
Chromosome Location	chr9:96661535-96661536
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:96659943..96662280-chr9:96662528..96664579,2	K562	blood:
2	chr9:96655426..96659394-chr9:96661426..96665501,6	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10114408	0.81[EUR][1000 genomes]
rs10115047	0.81[EUR][1000 genomes]
rs10115198	0.86[EUR][1000 genomes]
rs10761297	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10761303	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10761304	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10821253	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10821254	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10821255	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10821256	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10821257	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10821258	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10992954	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10992960	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10992961	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10992962	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11792740	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1320544	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1320545	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1890374	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1890378	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1890379	1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1890380	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1933672	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1933673	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1933674	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1933675	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2153062	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2153067	0.93[EUR][1000 genomes]
rs3996255	0.81[EUR][1000 genomes]
rs4484756	0.81[EUR][1000 genomes]
rs57222595	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6479519	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7030088	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7033563	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7035672	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7047570	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7048848	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893588	chr9:96620419-96668352	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv893589	chr9:96624645-96884544	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv1053137	chr9:96644876-96683214	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv1046904	chr9:96647940-96689327	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1035418	chr9:96647940-96711409	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Active TSS Strong transcription	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	esv1801607	chr9:96657324-96683214	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv1042043	chr9:96657324-96689327	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96658600-96661600	Enhancers	Primary T cells fromperipheralblood	blood
2	chr9:96658600-96661600	Enhancers	Primary T helper naive cells from peripheral blood	blood
3	chr9:96659000-96661600	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr9:96659000-96661600	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr9:96660600-96661600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr9:96660800-96661800	Bivalent Enhancer	Fetal Muscle Trunk	muscle

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