Variant report

Variant	rs2153067
Chromosome Location	chr9:96669708-96669709
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96652322..96655527-chr9:96667781..96670779,3	MCF-7	breast:
2	chr9:96669102..96671238-chr9:96671311..96673716,2	MCF-7	breast:
3	chr9:96665849..96668496-chr9:96668506..96670375,2	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10114408	0.86[EUR][1000 genomes]
rs10114411	0.96[AFR][1000 genomes]
rs10115020	0.84[EUR][1000 genomes]
rs10115047	0.86[EUR][1000 genomes]
rs10115198	0.82[EUR][1000 genomes]
rs10761297	0.90[EUR][1000 genomes]
rs10761303	0.91[EUR][1000 genomes]
rs10761304	0.91[EUR][1000 genomes]
rs10821253	0.91[EUR][1000 genomes]
rs10821254	0.90[EUR][1000 genomes]
rs10821255	0.91[EUR][1000 genomes]
rs10821256	0.91[EUR][1000 genomes]
rs10821257	0.91[EUR][1000 genomes]
rs10821258	0.90[EUR][1000 genomes]
rs10992954	0.90[EUR][1000 genomes]
rs10992960	0.91[EUR][1000 genomes]
rs10992961	0.91[EUR][1000 genomes]
rs10992962	0.91[EUR][1000 genomes]
rs11792740	0.91[EUR][1000 genomes]
rs1320544	0.91[EUR][1000 genomes]
rs1320545	0.91[EUR][1000 genomes]
rs1890374	0.91[EUR][1000 genomes]
rs1890376	0.93[EUR][1000 genomes]
rs1890378	0.92[EUR][1000 genomes]
rs1890379	0.87[YRI][hapmap];0.93[EUR][1000 genomes]
rs1890380	0.87[YRI][hapmap];0.93[EUR][1000 genomes]
rs1933672	0.91[EUR][1000 genomes]
rs1933673	0.91[EUR][1000 genomes]
rs1933674	0.91[EUR][1000 genomes]
rs1933675	0.91[EUR][1000 genomes]
rs2153062	0.91[EUR][1000 genomes]
rs3996255	0.86[EUR][1000 genomes]
rs4484756	0.86[EUR][1000 genomes]
rs57222595	0.92[EUR][1000 genomes]
rs6479519	0.90[EUR][1000 genomes]
rs7030088	0.93[EUR][1000 genomes]
rs7033563	0.93[EUR][1000 genomes]
rs7035672	0.87[EUR][1000 genomes]
rs7047570	0.92[EUR][1000 genomes]
rs7048848	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893589	chr9:96624645-96884544	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1053137	chr9:96644876-96683214	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv1046904	chr9:96647940-96689327	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv1035418	chr9:96647940-96711409	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Active TSS Strong transcription	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	esv1801607	chr9:96657324-96683214	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv1042043	chr9:96657324-96689327	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96665400-96674400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:96666000-96674600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:96666600-96671000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr9:96668000-96671000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr9:96669600-96670600	Bivalent Enhancer	Stomach Mucosa	stomach

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