Variant report

Variant	rs1320817
Chromosome Location	chr15:93577786-93577787
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:93577362..93579561-chr15:93579719..93582659,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs4238485	1.00[CHB][hapmap]
rs57374349	0.90[AMR][1000 genomes]
rs61321978	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
2	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
3	nsv530846	chr15:93323949-94030462	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases
4	nsv948881	chr15:93383740-93603608	Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
5	nsv917347	chr15:93444094-93586814	Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases
6	nsv904500	chr15:93556442-93584615	Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1041668	chr15:93558188-93611598	Bivalent Enhancer Strong transcription Genic enhancers Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
8	esv1835897	chr15:93568884-93589740	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
9	nsv1052724	chr15:93569701-93622666	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
10	nsv526532	chr15:93570723-93597006	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
11	nsv904501	chr15:93570723-93600158	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
12	nsv904502	chr15:93570723-93600976	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
13	nsv525266	chr15:93570723-93602056	Weak transcription Strong transcription Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
14	nsv904503	chr15:93570723-93605090	Enhancers Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
15	nsv523617	chr15:93570723-93610139	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
16	nsv1043084	chr15:93572133-93598434	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
17	nsv542471	chr15:93572133-93598434	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
18	esv1815629	chr15:93572782-93596165	Strong transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
19	nsv1045427	chr15:93576982-93598440	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93570000-93579000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr15:93570200-93586000	Weak transcription	Aorta	Aorta
3	chr15:93570400-93585600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr15:93570400-93586400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr15:93571400-93585800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr15:93571800-93579400	Weak transcription	GM12878-XiMat	blood
7	chr15:93572400-93579400	Weak transcription	Fetal Heart	heart
8	chr15:93572400-93585800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr15:93572800-93579400	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr15:93573000-93579200	Weak transcription	Primary B cells from cord blood	blood
11	chr15:93573800-93579200	Weak transcription	Primary hematopoietic stem cells	blood
12	chr15:93573800-93580400	Weak transcription	Fetal Intestine Large	intestine
13	chr15:93574000-93579000	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr15:93574000-93579000	Weak transcription	K562	blood
15	chr15:93574000-93579200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr15:93574000-93580600	Weak transcription	Ovary	ovary
17	chr15:93574000-93585800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr15:93574400-93578600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr15:93574400-93578600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr15:93574400-93578800	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr15:93574400-93578800	Weak transcription	Primary B cells from peripheral blood	blood
22	chr15:93574400-93579000	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr15:93574400-93579000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr15:93574400-93579000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr15:93574400-93579000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr15:93574400-93579000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr15:93574400-93579000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr15:93574400-93579000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr15:93574400-93579000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr15:93574400-93579000	Weak transcription	Lung	lung
31	chr15:93574400-93579000	Weak transcription	Pancreas	Pancrea
32	chr15:93574400-93579000	Weak transcription	Spleen	Spleen
33	chr15:93574400-93579000	Weak transcription	Monocytes-CD14+_RO01746	blood
34	chr15:93574400-93579200	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr15:93574400-93579200	Weak transcription	Gastric	stomach
36	chr15:93574400-93579200	Weak transcription	Thymus	Thymus
37	chr15:93574400-93579400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr15:93574400-93579400	Weak transcription	Fetal Thymus	thymus
39	chr15:93574400-93579600	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr15:93574400-93580200	Weak transcription	HSMMtube	muscle
41	chr15:93574400-93580400	Weak transcription	Adipose Nuclei	Adipose
42	chr15:93574400-93580400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr15:93574400-93580600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr15:93574400-93582200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr15:93574400-93582400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr15:93574400-93586200	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr15:93574400-93587000	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr15:93574400-93587600	Weak transcription	Left Ventricle	heart
49	chr15:93574600-93578000	Weak transcription	Colon Smooth Muscle	Colon
50	chr15:93574600-93579200	Weak transcription	Esophagus	oesophagus

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